GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000906-TA|BGIBMGA000906-PA|undefined
         (104 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   0.58 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   1.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   1.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   1.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 0.58
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 61  RAAQEQDYADDEEPHDIAASMKALARSVHGDAFELP 96
           +  + QDY   E    + +  K L++SV+GD  + P
Sbjct: 775 KGMETQDYRIPEVMRRLMSEDKRLSKSVNGDQSQPP 810


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 46  IARSLPMNMPKFPNDR 61
           I  S PMN+  FP DR
Sbjct: 134 ITASCPMNLQYFPMDR 149


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 46  IARSLPMNMPKFPNDR 61
           I  S PMN+  FP DR
Sbjct: 134 ITASCPMNLQYFPMDR 149


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
          subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 46 IARSLPMNMPKFPNDR 61
          I  S PMN+  FP DR
Sbjct: 73 ITASCPMNLQYFPMDR 88


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.132    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,782
Number of Sequences: 429
Number of extensions: 1007
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 104
length of database: 140,377
effective HSP length: 49
effective length of query: 55
effective length of database: 119,356
effective search space:  6564580
effective search space used:  6564580
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)