GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000906-TA|BGIBMGA000906-PA|undefined
         (104 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19420.1 68416.m02463 expressed protein                             27   1.8  
At4g14700.1 68417.m02259 replication control protein, putative s...    27   2.4  
At3g16730.1 68416.m02136 expressed protein ; expression supporte...    27   2.4  
At5g64830.1 68418.m08156 programmed cell death 2 C-terminal doma...    27   3.1  
At3g26400.1 68416.m03292 eukaryotic translation initiation facto...    26   5.5  
At1g62050.1 68414.m06999 ankyrin repeat protein-related contains...    26   5.5  
At5g16600.1 68418.m01943 myb family transcription factor (MYB43)...    25   7.3  
At3g29075.1 68416.m03637 glycine-rich protein                          25   9.6  
At1g41820.1 68414.m04825 hypothetical protein                          25   9.6  

>At3g19420.1 68416.m02463 expressed protein
          Length = 611

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 43  VPEIARSLPMNMPKFPNDRAAQEQDYADDEEPHDIAASMKALARSVHGDAFELPRPRFST 102
           +P  A ++P N P  P    A E     D+ P  +A+ + A   S      ++P+P  ST
Sbjct: 8   LPAAAGTVPDNHPPPPPVVTAAEA--GSDDSPKGVASKLSAAGISNWAKNLKVPQPFAST 65

Query: 103 Q 103
           Q
Sbjct: 66  Q 66


>At4g14700.1 68417.m02259 replication control protein, putative
           similar to origin recognition complex subunit 1
           (Replication control protein 1) [Homo sapiens]
           SWISS-PROT:Q13415
          Length = 809

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 59  NDRAAQEQDYADDEEPHDIAASMKALARSVHGDA 92
           N R  +E DY+D+E   D   S++ +++S  G A
Sbjct: 355 NGRKEEEIDYSDEEIEFDDEESVRGVSKSKRGGA 388


>At3g16730.1 68416.m02136 expressed protein ; expression supported
           by MPSS
          Length = 695

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 67  DYADDEEPHDIAASMKALARSVHGDAFELPRPRFST 102
           D   D+E H++A +  AL + V+    +L +P  ST
Sbjct: 549 DLMKDQEKHEVARAFSALLQLVNNGDVDLEKPGNST 584


>At5g64830.1 68418.m08156 programmed cell death 2 C-terminal
           domain-containing protein low similarity to SP|P46718
           Programmed cell death protein 2 (Zinc finger protein
           Rp-8) {Mus musculus}; contains Pfam profile PF04194:
           Programmed cell death protein 2, C-terminal domain
          Length = 380

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 23  CRTEESAGEGVQITRP--RGGGVPEIARSLPMNMPKFPNDRAAQEQDYADDEEPHDIAAS 80
           C T E +     I +   +  G  +IA  LP+  PK  +     + D  DD+E  D A+ 
Sbjct: 87  CGTSEQSWRAFSIQKAIAKEKGSTKIA-DLPVAFPK-THRLDGDDDDDDDDDEDFDFASL 144

Query: 81  MKALARS 87
            KALA +
Sbjct: 145 AKALAEA 151


>At3g26400.1 68416.m03292 eukaryotic translation initiation factor
           4B, putative/ eIF-4B, putative similar to eukaryotic
           initiation factor 4B [Arabidopsis thaliana] GI:6739518
          Length = 532

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 28  SAGEGVQITRPRGGGVPEIARSLPMNMPKFPN-DRAAQEQDYADDEEP 74
           S G G    RP GGG  +  R     +  FP   RA +  D+  +++P
Sbjct: 133 SGGGGGGGRRPYGGGFDDDRRGNQSRVSDFPQPSRADEVDDWGKEKKP 180


>At1g62050.1 68414.m06999 ankyrin repeat protein-related contains
           weak hit to Pfam profile PF00023: Ankyrin repeat
          Length = 497

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 51  PMNMPKFPNDRAAQEQDYADDEEP 74
           P++ P+F     A E+D++D E+P
Sbjct: 404 PLSSPRFLYSATAGEEDHSDGEKP 427


>At5g16600.1 68418.m01943 myb family transcription factor (MYB43)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 327

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 64  QEQDYADDEEPHDIAASMKALARSVHGDAF 93
           Q+Q   D++E H +  +++    SV GD F
Sbjct: 155 QDQQTKDEQEQHQLEQALEKNNTSVSGDGF 184


>At3g29075.1 68416.m03637 glycine-rich protein 
          Length = 294

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 87  SVHGDAFELPRPRFST 102
           S+ GDAFE  RP FS+
Sbjct: 48  SLSGDAFEYQRPNFSS 63


>At1g41820.1 68414.m04825 hypothetical protein
          Length = 401

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 10  YEPVSFVLQVVRLCRTEESAGEG 32
           YE   FVL++++L   E S  EG
Sbjct: 194 YEKTDFVLEIIKLVLEERSQKEG 216


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.132    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,070
Number of Sequences: 28952
Number of extensions: 91459
Number of successful extensions: 215
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 9
length of query: 104
length of database: 12,070,560
effective HSP length: 71
effective length of query: 33
effective length of database: 10,014,968
effective search space: 330493944
effective search space used: 330493944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)