Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000904-TA|BGIBMGA000904-PA|IPR008979|Galactose-binding
like, IPR012919|Sad1/UNC-like, C-terminal
         (235 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    26   0.22 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   6.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   6.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   6.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   6.3  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 104 AFKGSKGQAMIRLLGTVKVMGVSVEHIPAHISPTREIS 141
           +FK SK ++ + +  +  ++  ++ HI  HI PT+ IS
Sbjct: 35  SFKLSKIRSFLNITASAVLLPFAIYHIFMHIVPTKLIS 72


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/35 (22%), Positives = 20/35 (57%)

Query: 107  GSKGQAMIRLLGTVKVMGVSVEHIPAHISPTREIS 141
            G +  ++I +  +++++   ++HI   I P+  IS
Sbjct: 1128 GDEKASLINIADSLEMLNKRLDHIEKTIDPSGHIS 1162


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/35 (22%), Positives = 20/35 (57%)

Query: 107  GSKGQAMIRLLGTVKVMGVSVEHIPAHISPTREIS 141
            G +  ++I +  +++++   ++HI   I P+  IS
Sbjct: 1128 GDEKASLINIADSLEMLNKRLDHIEKTIDPSGHIS 1162


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/35 (22%), Positives = 20/35 (57%)

Query: 107  GSKGQAMIRLLGTVKVMGVSVEHIPAHISPTREIS 141
            G +  ++I +  +++++   ++HI   I P+  IS
Sbjct: 1128 GDEKASLINIADSLEMLNKRLDHIEKTIDPSGHIS 1162


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/35 (22%), Positives = 20/35 (57%)

Query: 107  GSKGQAMIRLLGTVKVMGVSVEHIPAHISPTREIS 141
            G +  ++I +  +++++   ++HI   I P+  IS
Sbjct: 1128 GDEKASLINIADSLEMLNKRLDHIEKTIDPSGHIS 1162


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,340
Number of Sequences: 317
Number of extensions: 2329
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 235
length of database: 114,650
effective HSP length: 55
effective length of query: 180
effective length of database: 97,215
effective search space: 17498700
effective search space used: 17498700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)