GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000904-TA|BGIBMGA000904-PA|IPR008979|Galactose-binding
like, IPR012919|Sad1/UNC-like, C-terminal
         (235 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    71   1e-13
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    27   1.8  
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom...    27   2.4  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    26   4.1  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   7.2  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    25   9.6  

>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 10/137 (7%)

Query: 90  SAMIRPGTLPGECWAFKGSKGQAMIRLLGTVKVMGVSVEHIPAHISPTREISSAPRLFQ- 148
           S  + P      CW+F+GS+GQ  I L   V V  V++EH+   I+   ++SSAP+ F+ 
Sbjct: 361 SIALTPNNAVAMCWSFQGSEGQLGISLSRPVYVTNVTIEHVQHKIA--HDLSSAPKDFEL 418

Query: 149 -VEGLEYRSDPYPHDFGTVEYDKEGKPIQYFEVL---YPSTKGYSLIRIRVLTNWGHPVY 204
            V+G+  +        G   Y      IQ F      Y   +    + +++ +NWG+P Y
Sbjct: 419 WVQGMSSKMFVL---LGKARYSLTEDSIQTFSFESSNYIVAEPIQNVILKIKSNWGNPNY 475

Query: 205 TCVYRVRVHGELSGRNQ 221
           TC+Y+VRVHG +   ++
Sbjct: 476 TCLYQVRVHGTVPNADE 492


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 6/41 (14%)

Query: 39  YDRQVADYALESAGGR-----ILDTGDTIEHLVYESPISWG 74
           YD  +  Y  +S+ G      ++DTG +I H+ +E   SWG
Sbjct: 199 YD-DIGKYVYDSSAGDNITAYVVDTGVSIHHVEFEGRASWG 238


>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 27  RKNSRQALDNYDYDR-QVADYALESAGGRILDTGDTIEHLVYESPISWGLHLIT 79
           R + R+ L  +   R Q  + A E     ++DTG  IEH  ++   +WG  + T
Sbjct: 174 RVSHRKKLGFFTMTRYQYNETAGEGVTAYVIDTGINIEHQDFQGRATWGATIPT 227


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 158 PYPHDFGTVEYDKEGKPIQYFEVLYPSTKGYSLIR-IRVLTNWGHPVYTCVYRV 210
           P   DF  + +   G  +QY  V  PS   Y  I+ +R  T  G    TC  R+
Sbjct: 397 PISLDFNILMFTSSGLHVQYLRVSEPSNSKYKSIKWVRYSTRAG----TCEIRI 446


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 49   ESAGGRILDTGDTIEHLVYESPISWGLHLITSWMCRECQGASAMIRPGTLPGECWAFKGS 108
            + A  + L  GDT+   + +  I+ G   +TSW   +       +  G  PGE     G+
Sbjct: 980  DPARSQRLANGDTMRSAIKQ--IASGRFGVTSWYLSDADELQIKMAQGAKPGEGGELPGN 1037

Query: 109  K 109
            K
Sbjct: 1038 K 1038


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 39  YDRQVADYALESAGGRILDTG 59
           YDR   +  ++  GG +LDTG
Sbjct: 556 YDRSALETVVQDHGGLVLDTG 576


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,055,954
Number of Sequences: 5004
Number of extensions: 42928
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 6
length of query: 235
length of database: 2,362,478
effective HSP length: 71
effective length of query: 164
effective length of database: 2,007,194
effective search space: 329179816
effective search space used: 329179816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)