Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000904-TA|BGIBMGA000904-PA|IPR008979|Galactose-binding
like, IPR012919|Sad1/UNC-like, C-terminal
(235 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0238 - 10783451-10783735,10784686-10785762 70 2e-12
01_01_1154 - 9178427-9178738,9179819-9180874 62 3e-10
02_04_0487 + 23353587-23354603 29 2.5
02_04_0484 + 23307119-23308135 29 2.5
04_01_0388 + 5126669-5127009,5127293-5127614 29 4.3
07_03_0340 + 16949105-16949109,16949328-16949436,16949547-169496... 28 7.5
07_01_0535 + 3952066-3952986 28 7.5
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 28 7.5
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183... 27 9.9
07_03_1520 + 27415266-27415507,27415608-27415722,27415761-274158... 27 9.9
02_05_1200 - 34922073-34922273,34922397-34922469,34922976-349230... 27 9.9
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011... 27 9.9
>05_03_0238 - 10783451-10783735,10784686-10785762
Length = 453
Score = 69.7 bits (163), Expect = 2e-12
Identities = 57/185 (30%), Positives = 85/185 (45%), Gaps = 21/185 (11%)
Query: 43 VADYALESAGGRILDTGDTIEHLVYESPISWGLHLITSWMCRECQGASAMIRPGT-LPGE 101
+ DYAL S GG+++ + P L + A M+ P PGE
Sbjct: 279 MVDYALASGGGKVVKHSEAFRKAKSFMPSRNSL----------LEQAKKMLEPSFGQPGE 328
Query: 102 CWAFKGSKGQAMIRLLGTVKVMGVSVEHIPAHISPTREISSAPRLFQV----EGLEYRSD 157
C+A +GS G I+L + VS+EH+ ++ R SSAP+ FQV EG E SD
Sbjct: 329 CFALQGSSGYVEIKLRTGIIPEAVSLEHVDKSVAYDR--SSAPKDFQVSGWYEGPEDDSD 386
Query: 158 PYPH---DFGTVEYDKEGKPIQYFEV-LYPSTKGYSLIRIRVLTNWGHPVYTCVYRVRVH 213
+ G YD E Q F++ ++ +++R+ +N G+ TC+YR RVH
Sbjct: 387 KESRVVTNLGEFSYDLEKNNAQTFQLERTADSRVINMVRLDFCSNHGNSELTCIYRFRVH 446
Query: 214 GELSG 218
G G
Sbjct: 447 GREPG 451
>01_01_1154 - 9178427-9178738,9179819-9180874
Length = 455
Score = 62.5 bits (145), Expect = 3e-10
Identities = 46/182 (25%), Positives = 88/182 (48%), Gaps = 21/182 (11%)
Query: 45 DYALESAGGRILDTGDTIEHLVYESPISWGLHLITSWMCRECQGASAMIRPGTL--PGEC 102
DYA+ SAGG+++ D Y++ G +S + + + I + PG+C
Sbjct: 270 DYAVASAGGKVVRHSDA-----YDAGKRGGF--FSSLLSGDTAASPKKILQPSFGEPGQC 322
Query: 103 WAFKGSKGQAMIRLLGTVKVMGVSVEHIPAHISPTREISSAPRLFQVEGL--EYRSDPYP 160
+ +GS G I+L + +++EH+ ++ ++S+AP+ +V G E ++ Y
Sbjct: 323 FPLQGSSGFVEIKLRKGIVPDAITLEHVSKDVA--YDMSTAPKDCRVSGWYQEAHNEAYS 380
Query: 161 HDFGTVE--------YDKEGKPIQYFEVLYPSTKGYSLIRIRVLTNWGHPVYTCVYRVRV 212
+ + YD + K +Q F++ P +++R+ +N G TC+YR+RV
Sbjct: 381 GHAASAKMYVLTEFTYDLDKKNVQTFDITAPDVGIINMVRLDFTSNHGSSALTCIYRIRV 440
Query: 213 HG 214
HG
Sbjct: 441 HG 442
>02_04_0487 + 23353587-23354603
Length = 338
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 86 CQGASAMIRPGTLPGECWAFKGSKGQAMI---RLLGTVKVMGVSVEHIPAHISP 136
C GAS R L G C + G G+A+ GT V+ EH+P H SP
Sbjct: 279 CFGASLDARTTGLRGNCIYYSGFNGKALCVYDMERGTTAVINPG-EHLPYHQSP 331
>02_04_0484 + 23307119-23308135
Length = 338
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 86 CQGASAMIRPGTLPGECWAFKGSKGQAMI---RLLGTVKVMGVSVEHIPAHISP 136
C GAS R L G C + G G+A+ GT V+ EH+P H SP
Sbjct: 279 CFGASLDARTTGLRGNCIYYSGFNGKALCVYDMERGTTAVINPG-EHLPYHQSP 331
>04_01_0388 + 5126669-5127009,5127293-5127614
Length = 220
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 113 MIRLLGTVKVMGVSVEHIPAHISPTREISSAP--RLFQVEGLEYRSDPYPHDFGTVEYD 169
M+RLL + V+ S E P P R S AP RLF G +R P V+ D
Sbjct: 51 MLRLLASFDVVKCSTEAGPGGEPPRRRYSPAPVCRLFTAGGNSHRGSLAPSVLFGVDED 109
>07_03_0340 +
16949105-16949109,16949328-16949436,16949547-16949642,
16949685-16949771,16952658-16953299
Length = 312
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 60 DTIEHLVYESPISWGLHLITSWMCRECQGASAMIRPGTLPGECWAFKGSKGQAMIRLLGT 119
+ I +V +P S+ L LI SW C A + RP + A + Q R++
Sbjct: 80 EMISIVVKNTPPSFSLRLINSWCEDRCVIAVVVPRPSEVAVREIATHWFEDQRTCRIISR 139
Query: 120 VKVMGVSVEHIPAH 133
+M V+V I H
Sbjct: 140 T-LMEVAVREIATH 152
>07_01_0535 + 3952066-3952986
Length = 306
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 128 EHIPAHISPTREISSAPRLFQVEGLEYRSDPYPHDFGTV--EYDKEGKPIQYFE 179
+H P+ + R+ LFQ +G+E + PYP++ + E D++ P +Y +
Sbjct: 34 QHAPSLVQQLRQDDKLKTLFQRQGMELQ-PPYPYEDQELQSEGDEQETPNRYHD 86
>06_03_0867 + 25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/69 (20%), Positives = 29/69 (42%)
Query: 28 KNSRQALDNYDYDRQVADYALESAGGRILDTGDTIEHLVYESPISWGLHLITSWMCRECQ 87
+NSRQ+ + +Y S G +++ + ++ + W LH + S + ++ Q
Sbjct: 1774 RNSRQSSSDLRKPSTCNEYVRVSKGNQLVRNPKNVIRMLASDKVRWSLHTVRSRLAKKQQ 1833
Query: 88 GASAMIRPG 96
R G
Sbjct: 1834 YCQFFTRFG 1842
>08_02_0113 -
12715888-12716181,12717443-12717602,12718327-12718368,
12718443-12718465,12718616-12720653,12720736-12720965,
12722207-12722329,12722438-12723010,12724684-12724733,
12726828-12726923,12726987-12727394,12727609-12727795
Length = 1407
Score = 27.5 bits (58), Expect = 9.9
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 48 LESAGGRILDTGDTIEHLVYESPISWGLHLITSWMCRECQGASAMIRPGTLPGECWAFKG 107
L+S LD GD E +V++ P+S L +TS Q ++ +++P + W+ G
Sbjct: 854 LQSKAQLFLD-GDDDEEIVFKPPVSEKLPRVTSE-----QTSNELLQPVVVSDVNWSNDG 907
Query: 108 SKGQAMIRLLGTVKVMGVSVEHIP 131
+ + G V V V+ +P
Sbjct: 908 APPPMTFQSNGPVLTPNVYVQSLP 931
>07_03_1520 +
27415266-27415507,27415608-27415722,27415761-27415815,
27415862-27417849,27418161-27418589
Length = 942
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 46 YALESAGGRILDTGDTIEHLVYESPISWGLHLITSWM 82
Y+ E G I+DTGD EH+ + P + + SWM
Sbjct: 522 YSQEGKEGTIVDTGDGQEHIDQDHP--HNNNRLNSWM 556
>02_05_1200 -
34922073-34922273,34922397-34922469,34922976-34923019,
34923107-34923183,34923433-34923529,34923668-34924062,
34926577-34926620,34926702-34926770,34926856-34926956,
34927689-34927856,34927940-34928141,34928269-34928708,
34928786-34928884,34929123-34929263
Length = 716
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 120 VKVMGVSVEHIPAHISPTREISSAPRLFQVEGLE 153
+KV G+++ H+ +H+ R + P+L G+E
Sbjct: 596 MKVDGLTIYHVKSHLQKYRTVHHRPQLSDGRGME 629
>02_05_0448 -
29100674-29100716,29100821-29100902,29101010-29101130,
29101481-29101546,29101628-29101735,29102083-29102148,
29102605-29102633,29102773-29102902
Length = 214
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 127 VEHIPAHISPTREISSAPRLFQVEGLEYRSDPYPHDFGTVEYD--KEGKPIQYFEVLYPS 184
V IP E+ A L +V+ + Y S YPH++G + ++G P+ ++
Sbjct: 54 VVEIPRGSKVKYELDKATGLIKVDRVLYSSVVYPHNYGFIPRTLCEDGDPMDVLVLMQEQ 113
Query: 185 TKGYSLIRIRVL 196
+R R +
Sbjct: 114 VVPGCFLRARAI 125
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.136 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,956,571
Number of Sequences: 37544
Number of extensions: 293798
Number of successful extensions: 516
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 508
Number of HSP's gapped (non-prelim): 12
length of query: 235
length of database: 14,793,348
effective HSP length: 80
effective length of query: 155
effective length of database: 11,789,828
effective search space: 1827423340
effective search space used: 1827423340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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