GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000904-TA|BGIBMGA000904-PA|IPR008979|Galactose-binding
like, IPR012919|Sad1/UNC-like, C-terminal
         (235 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55864| Best HMM Match : Sad1_UNC (HMM E-Value=6.9e-25)              56   3e-08
SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_21141| Best HMM Match : Collagen (HMM E-Value=0.01)                 29   2.5  
SB_2709| Best HMM Match : SBP (HMM E-Value=0.83)                       29   4.4  
SB_41748| Best HMM Match : Transposase_14 (HMM E-Value=0.79)           29   4.4  

>SB_55864| Best HMM Match : Sad1_UNC (HMM E-Value=6.9e-25)
          Length = 526

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 164 GTVEYDKEGKPIQYFEVL-YPSTKGYSLIRIRVLTNWGHPVYTCVYRVRVHGEL 216
           G   Y KEGK +Q F+V   PS   +  + +RVL+N G   +TC+YR+RVHG+L
Sbjct: 467 GNFTYKKEGKSLQTFQVKGTPSDAVFRYVELRVLSNHGQATHTCIYRLRVHGDL 520



 Score = 34.3 bits (75), Expect = 0.088
 Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 92  MIRPGTLPGECWAFKGSKGQAMIR 115
           +I+P   PG+CWAF+G +G  +I+
Sbjct: 430 IIQPDNKPGQCWAFQGQQGYVVIK 453


>SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1750

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 10/78 (12%)

Query: 86  CQGASAMIRP---GTLPGECWAFKGSKGQAMIRLLGTVKVMGVSVEHIPAHISPTREISS 142
           CQ A  ++ P     LP +   FK   G  + + LGT+  +G S +  PA ISP   ++ 
Sbjct: 326 CQWAQDILPPLEEPQLPEDMLGFKKPSGSYISQGLGTLPKLGPSGK--PASISPLSPVN- 382

Query: 143 APRLFQVEGLEYRSDPYP 160
            P L  +  L+   DPYP
Sbjct: 383 -PGLAGIAALD---DPYP 396


>SB_21141| Best HMM Match : Collagen (HMM E-Value=0.01)
          Length = 738

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 27  RKNSRQALDNYDYDRQVADYALESAGGRI 55
           R  S  +LDN  +DR+ + YA++S  GR+
Sbjct: 134 RAYSTMSLDNRSHDRKFSPYAMDSVRGRL 162


>SB_2709| Best HMM Match : SBP (HMM E-Value=0.83)
          Length = 154

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 119 TVKVMGVSVEHIPAHISPTREISSAPR-LFQVEGLEYRSD 157
           TVK+  +   +IP H        ++P+  F+ +GL YRS+
Sbjct: 65  TVKLKSIKTYYIPVHNEHASNKKASPKSFFRSDGLHYRSN 104


>SB_41748| Best HMM Match : Transposase_14 (HMM E-Value=0.79)
          Length = 270

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 119 TVKVMGVSVEHIPAHISPTREISSAPR-LFQVEGLEYRSD 157
           TVK+  +   +IP H        ++P+  F+ +GL YRS+
Sbjct: 65  TVKLKSIKTYYIPVHNEHASNKKASPKSFFRSDGLHYRSN 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,907,439
Number of Sequences: 59808
Number of extensions: 325531
Number of successful extensions: 479
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 474
Number of HSP's gapped (non-prelim): 7
length of query: 235
length of database: 16,821,457
effective HSP length: 80
effective length of query: 155
effective length of database: 12,036,817
effective search space: 1865706635
effective search space used: 1865706635
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)