GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000904-TA|BGIBMGA000904-PA|IPR008979|Galactose-binding
like, IPR012919|Sad1/UNC-like, C-terminal
         (235 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical pr...    90   1e-18
AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein.    90   1e-18
Z82259-6|CAB97264.1|  339|Caenorhabditis elegans Hypothetical pr...    31   0.95 
Z78064-6|CAB01511.1|  473|Caenorhabditis elegans Hypothetical pr...    30   1.3  

>Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical protein
            F54B11.3a protein.
          Length = 1111

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 6/189 (3%)

Query: 31   RQALDNYDYDRQ-VADYALESAGGRILDTGDTIEHLVY-ESPISWGLHLITSWMCRECQG 88
            RQ +  YD D+    DYALES+GG ++ T  +  +  Y      W + +   +     + 
Sbjct: 923  RQMIYEYDTDKTGKVDYALESSGGAVVSTRCSETYKSYTRLEKFWDIPIY--YFHYSPRV 980

Query: 89   ASAMIRPGTLPGECWAFKGSKGQAMIRLLGTVKVMGVSVEHIPAHISPTREISSAPRLFQ 148
                      PGECW FK S+G   + L   + V  +S EHI + ++P    SSAP+   
Sbjct: 981  VIQRNSKSLFPGECWCFKESRGYIAVELSHFIDVSSISYEHIGSEVAPEGNRSSAPKGVL 1040

Query: 149  VEGLEYRSDPYPHD-FGTVEYDKEGKPIQYFEVLYPSTKGYSLIRIRVLTNWGHPVYTCV 207
            V   +   D       G   YD +G P+Q+F   +        + + V +N+G P +TC+
Sbjct: 1041 VWAYKQIDDLNSRVLIGDYTYDLDGPPLQFFLAKHKPDFPVKFVELEVTSNYGAP-FTCL 1099

Query: 208  YRVRVHGEL 216
            YR+RVHG++
Sbjct: 1100 YRLRVHGKV 1108


>AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein.
          Length = 1111

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 6/189 (3%)

Query: 31   RQALDNYDYDRQ-VADYALESAGGRILDTGDTIEHLVY-ESPISWGLHLITSWMCRECQG 88
            RQ +  YD D+    DYALES+GG ++ T  +  +  Y      W + +   +     + 
Sbjct: 923  RQMIYEYDTDKTGKVDYALESSGGAVVSTRCSETYKSYTRLEKFWDIPIY--YFHYSPRV 980

Query: 89   ASAMIRPGTLPGECWAFKGSKGQAMIRLLGTVKVMGVSVEHIPAHISPTREISSAPRLFQ 148
                      PGECW FK S+G   + L   + V  +S EHI + ++P    SSAP+   
Sbjct: 981  VIQRNSKSLFPGECWCFKESRGYIAVELSHFIDVSSISYEHIGSEVAPEGNRSSAPKGVL 1040

Query: 149  VEGLEYRSDPYPHD-FGTVEYDKEGKPIQYFEVLYPSTKGYSLIRIRVLTNWGHPVYTCV 207
            V   +   D       G   YD +G P+Q+F   +        + + V +N+G P +TC+
Sbjct: 1041 VWAYKQIDDLNSRVLIGDYTYDLDGPPLQFFLAKHKPDFPVKFVELEVTSNYGAP-FTCL 1099

Query: 208  YRVRVHGEL 216
            YR+RVHG++
Sbjct: 1100 YRLRVHGKV 1108


>Z82259-6|CAB97264.1|  339|Caenorhabditis elegans Hypothetical
           protein C28D4.7 protein.
          Length = 339

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 138 REISSAPRLFQVEGLEYRSDPYPHDFGTVEYDKEGKPIQYFEV-LYPS 184
           +  + AP ++ V+ L    DP    FG V YD  GK I +  V +YPS
Sbjct: 201 KNATEAPNMYIVKLLNLLRDP--EGFGKVAYDNNGKVIGFGNVIIYPS 246


>Z78064-6|CAB01511.1|  473|Caenorhabditis elegans Hypothetical
           protein F57B1.2 protein.
          Length = 473

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 11/136 (8%)

Query: 87  QGASAMIRPGTLPGECWAFKGSKGQAMIRLLGTVKVMGVSVEHIP-AHISPTREISSAPR 145
           +G + + R    PGE W     +    ++L   V    VS +H+  + I P      AP+
Sbjct: 310 EGYALLDRDVLSPGEAWCTYDKRATLTVKLARFVIPKSVSYQHVRWSGIVPNH----APK 365

Query: 146 LFQVEGL-EYRSDPYPHDFGTVEY-DKEGKPIQYFEVL-YPSTKGYSLI---RIRVLTNW 199
           L+ V    +     +       EY +++G   +  +    P+ + +S I   + R   N 
Sbjct: 366 LYDVVACTDSCCTKWQPLVANCEYKERDGSYDEQEQFCSVPTIQNHSPINHVQFRFRENH 425

Query: 200 GHPVYTCVYRVRVHGE 215
           G    TC Y +RV+GE
Sbjct: 426 GDMPKTCAYLIRVYGE 441


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,723,891
Number of Sequences: 27539
Number of extensions: 236381
Number of successful extensions: 413
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 6
length of query: 235
length of database: 12,573,161
effective HSP length: 79
effective length of query: 156
effective length of database: 10,397,580
effective search space: 1622022480
effective search space used: 1622022480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)