GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000904-TA|BGIBMGA000904-PA|IPR008979|Galactose-binding
like, IPR012919|Sad1/UNC-like, C-terminal
         (235 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04990.1 68418.m00528 sad1/unc-84 protein-related contains we...    68   5e-12
At3g10730.1 68416.m01292 sad1/unc-84-like 2 family protein conta...    59   2e-09
At2g03210.1 68415.m00274 xyloglucan fucosyltransferase, putative...    28   6.3  
At4g27190.1 68417.m03905 disease resistance protein (NBS-LRR cla...    27   8.3  

>At5g04990.1 68418.m00528 sad1/unc-84 protein-related contains weak
           similarity to Sad1/unc-84 protein-like 1
           (Swiss-Prot:O94901) [Homo sapiens]
          Length = 471

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 16/177 (9%)

Query: 45  DYALESAGGRILDTGDTIEHLVYESPISWGLHLITSWMCRECQGASAMIRPGT-LPGECW 103
           DYAL S G  +++  D   +LV +   SW      + M R    A  M+ P    PG+C+
Sbjct: 282 DYALASGGAFVMEHSDP--YLVGKGS-SW----FATTMRRAHTNAVKMLSPSFGEPGQCF 334

Query: 104 AFKGSKGQAMIRLLGTVKVMGVSVEHIPAHISPTREISSAPRLFQV----EGLEYRSDPY 159
             KGS+G   IRL G +     ++EH+   ++  R  SSAP+  +V    +G E  ++  
Sbjct: 335 PLKGSEGYVQIRLRGPIIPEAFTLEHVAKSVAYDR--SSAPKDCRVSGSLQGPESSAETE 392

Query: 160 PHDFGT-VEYDKEGKPIQYFEVLYPSTKG-YSLIRIRVLTNWGHPVYTCVYRVRVHG 214
                T   YD +    Q F +L  S+ G    +R+   +N G   +TC+YR RVHG
Sbjct: 393 NMQLLTEFTYDLDRSNAQTFNILESSSSGLIDTVRLDFTSNHGSDSHTCIYRFRVHG 449


>At3g10730.1 68416.m01292 sad1/unc-84-like 2 family protein contains
           1 transmembrane domain; similar to Sad1 unc-84 domain
           protein 2 (GI:6538749) [Homo sapiens]; similar to
           Sad1/unc-84-like protein 2 (Fragment)
           (Swiss-Prot:Q9UH99) [Homo sapiens]
          Length = 455

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 8/121 (6%)

Query: 99  PGECWAFKGSKGQAMIRLLGTVKVMGVSVEHIPAHISPTREISSAPRLFQVEG----LEY 154
           PG+C+  KGS G  ++RL   +    V++EH+   ++  R  SSAP+  +V G    ++ 
Sbjct: 327 PGQCFPLKGSNGYVLVRLRAPIIPEAVTLEHVSKAVAYDR--SSAPKDCRVSGWLGDIDM 384

Query: 155 RSDPYPHDFGTVEYDKEGKPIQYFEVLYPSTKG-YSLIRIRVLTNWGHPVYTCVYRVRVH 213
            ++  P       YD +    Q F++   +  G  + +R+   +N G   +TC+YR RVH
Sbjct: 385 ETETMPL-LTEFSYDLDRSNAQTFDIADSAHSGLVNTVRLDFNSNHGSSSHTCIYRFRVH 443

Query: 214 G 214
           G
Sbjct: 444 G 444


>At2g03210.1 68415.m00274 xyloglucan fucosyltransferase, putative
           (FUT2) identical to SP|O81053 Probable
           fucosyltransferase 2 (EC 2.4.1.-) (AtFUT2) {Arabidopsis
           thaliana}; similar to xyloglucan fucosyltransferase
           GI:5231145 from [Arabidopsis thaliana]
          Length = 539

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 57  DTGDTIEHLVYESPISWGLHLITSW 81
           DTG+ + H+ +   ISWGL L+ ++
Sbjct: 515 DTGNVVPHVRHCEDISWGLKLVDNF 539


>At4g27190.1 68417.m03905 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 985

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 61  TIEHL-VYESPISWGLHLITSWMCRECQGASAMIR 94
           TI HL V +  I W L   TS     CQG  AM++
Sbjct: 728 TISHLNVSQVSIGWLLAYTTSLALNHCQGIEAMMK 762


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,513,601
Number of Sequences: 28952
Number of extensions: 228127
Number of successful extensions: 401
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 4
length of query: 235
length of database: 12,070,560
effective HSP length: 79
effective length of query: 156
effective length of database: 9,783,352
effective search space: 1526202912
effective search space used: 1526202912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)