Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000903-TA|BGIBMGA000903-PA|IPR000717|Proteasome
component region PCI
(386 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc... 84 3e-17
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos... 43 8e-05
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 30 0.63
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 29 0.84
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 28 2.6
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 28 2.6
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos... 28 2.6
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 27 4.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 4.5
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 5.9
>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 402
Score = 84.2 bits (199), Expect = 3e-17
Identities = 48/175 (27%), Positives = 90/175 (51%), Gaps = 5/175 (2%)
Query: 199 SYAREDAIKCIATALADPNTFLLDPLLTLKPVRFLEGELIHDLLTIFVSEKLSSYQTFY- 257
S A E + + A+ P F D ++TL PV+ LE + LL I Y ++
Sbjct: 205 STADEAVRELVQRAVNSPKYFFFDDIVTLPPVQQLEQSTLQ-LLGILSGGMTDDYVSWVA 263
Query: 258 NNHKEFVHSQGLNHEQNIKKMRILSFMQMAETNPD--LTFDEIISELQIEEKDVEAFVIE 315
NH H Q + + +KM++L+ +A P+ L++ ++ L+I+E +VE ++I+
Sbjct: 264 ENHAHCQH-QKFDEDAIARKMKLLTIASLATQAPNNTLSYGDVAKSLKIDENEVELWIID 322
Query: 316 VLKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRANVHQAHEAMK 370
V++ LV RM Q +T+ + + +R FG+ +W L + L W +++ + M+
Sbjct: 323 VIRAGLVEGRMSQLTKTLSIHRSSYRVFGKHEWVALHEKLAKWGSSLRYMLQVME 377
>SPAC607.05 |rpn9||19S proteasome regulatory subunit
Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 42.7 bits (96), Expect = 8e-05
Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 8/160 (5%)
Query: 209 IATALADPNTF---LLDPLLTLKPVRFLEGELIHDLLTIFVSEKLSSYQTFYN--NHKEF 263
+A L D F LL P+ L + + E +HDL+ L ++ N
Sbjct: 208 VAAILGDIYNFGELLLHPVFEL--LVGTQHEWLHDLVIAMNVGDLPLFERLMGQINKMPL 265
Query: 264 VHSQGLNHEQNIKKMRILSFM-QMAETNPDLTFDEIISELQIEEKDVEAFVIEVLKTRLV 322
+ S Q I+ M ++ + Q+ LTFD I +I +VE ++ L L+
Sbjct: 266 LQSSVALLGQKIRLMALIELVFQLPPNQRTLTFDTIARATRIPSNEVELLIMRALSVGLI 325
Query: 323 RARMDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRANV 362
+D+ + V +S+ R Q + L W N+
Sbjct: 326 TGVIDEVTQIVTISSVQSRILNHSQIASMESRLREWNQNI 365
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 29.9 bits (64), Expect = 0.63
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 153 FANCPPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGTYTDENASYAREDAIKCIAT 211
+A PS ++L +L D ++ + +++ L+GT +DE SY R+ +++ + T
Sbjct: 1579 WATTCPSRRLACNSFQLFRSLLPDFDARMLLEIISRLVGTISDE-TSYLRDYSVEILRT 1636
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 29.5 bits (63), Expect = 0.84
Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 22/154 (14%)
Query: 159 SNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGTYTDENASYAREDAIKCIATALADPNT 218
S+ Q+Q L + L L QN+EL K+ + + + ++Y+ + I I DP +
Sbjct: 222 SSRQVQDLEKKLAG-LAQQNTELNEKIQL-----FEQKRSNYSSDGNISKILET--DPTS 273
Query: 219 F--LLDPLLTLKPVRFLEGELIHDLLT--IFVSEKLSSYQTFYNNHKEFVHSQGLNHEQN 274
L + + T K + L +L + + EKL+S Q+ YNN E ++ N
Sbjct: 274 IKELEEEVETQKRLTALWESKSSELQSEVAALQEKLTSQQSLYNNVTEELN--------N 325
Query: 275 IKKMRILSFMQMAETNPDLTFDEIISELQIEEKD 308
K+ ++S + E +D ++SELQ+ +++
Sbjct: 326 NKQQLLISENSLRELQE--KYDSVVSELQVVKEN 357
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 110 RLYNNLEPNSPLRYHVYYHVIELAARV 136
RLY+ + + +R++V Y+V+E+A R+
Sbjct: 246 RLYHIIRAQASIRFYVLYNVLEIADRL 272
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 158 PSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLG 191
P +++Q+ YR H+VL+ ++ + V +LLG
Sbjct: 1027 PGKQRVQRTYRRTHEVLEPVGAKTSETVFNDLLG 1060
>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 27.9 bits (59), Expect = 2.6
Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
Query: 267 QGLNHEQNIKKMRILSFMQMAETNPDLTFDEIISELQIEEKDVEAFVIEVLKTRLVRARM 326
+GL ++ + K ++ + P+ ++ E + + T L + R
Sbjct: 66 RGLENKGKLSKTSLVEALARVRAKPETVLYKVADP---NENNKYPICSIISYTELSKLRE 122
Query: 327 DQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRANVHQAHEAMKSV 372
+Q+ R + H+ R ++ VL +WR +V+ +KSV
Sbjct: 123 NQSSRLREAEKSKHKNKTRTRY-----VLFSWRTDVNDIERKLKSV 163
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 27.1 bits (57), Expect = 4.5
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 247 SEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKMRILSFMQMAETNPDLTFDEIISELQIEE 306
S ++S+ + YN E H + H ++ + + ++ E E EL+I++
Sbjct: 580 SSEVSNLLSRYNT--EVAHLEDALHSKDRELANLGVELKSTENRYRQLLQEKEEELEIQK 637
Query: 307 KDVEAFVIEVLKTRLVRARMDQAQRT 332
V+ ++++ K +L R +DQA T
Sbjct: 638 AAVDESLLQLSKLQLDRNDIDQAMDT 663
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 27.1 bits (57), Expect = 4.5
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 182 AAKVMIELLGTYTDENASYAREDAIKCIATALADPNTFLL-DPLLTLKPVRFLEGELIHD 240
AAK+ IE + E + I C + AL+DP F D +L++ +EG D
Sbjct: 1262 AAKLNIEAIEQECSELIRGCQNLQIDCDSGALSDPTVFHPDDKILSVILPWLMEGTKKMD 1321
Query: 241 LLTIFVSEKLSSYQTFYNNHKEFVHSQGLN-HEQNIKKMRILSFM 284
F+ E L + T NN + Q + + +N+ R+ SF+
Sbjct: 1322 ----FLKEHLRTMNTTLNNAMRYFGEQPNDPNSKNLFFKRVDSFI 1362
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 135 RVGFVR---EVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNS 179
R+GF++ E E++R+E+ + YRLL +LKD++S
Sbjct: 1765 RIGFLKSQLESNNDSEEVRQEYEELTKRIVTLSDHYRLLEYLLKDESS 1812
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.134 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,649,590
Number of Sequences: 5004
Number of extensions: 67682
Number of successful extensions: 228
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 11
length of query: 386
length of database: 2,362,478
effective HSP length: 74
effective length of query: 312
effective length of database: 1,992,182
effective search space: 621560784
effective search space used: 621560784
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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