Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000903-TA|BGIBMGA000903-PA|IPR000717|Proteasome
component region PCI
(386 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0012 - 210670-210759,210939-211008,211138-211235,211318-21... 100 2e-21
01_05_0085 - 17995800-17995985,17996724-17996823,17996919-179971... 53 4e-07
03_02_0154 + 5967512-5967658,5968206-5968652,5968766-5968846,596... 49 7e-06
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 36 0.055
07_03_0438 - 18200329-18200430,18201203-18201335,18201964-182020... 34 0.17
05_03_0132 - 8786518-8786827,8786897-8787164,8787296-8788005,878... 33 0.51
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272... 31 2.1
04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180... 29 8.3
03_06_0116 + 31773295-31773603,31773800-31773946,31774080-317741... 29 8.3
>04_01_0012 -
210670-210759,210939-211008,211138-211235,211318-211427,
211533-211683,212247-212391,212483-212749,212819-212957,
213036-213270
Length = 434
Score = 100 bits (240), Expect = 2e-21
Identities = 75/272 (27%), Positives = 134/272 (49%), Gaps = 16/272 (5%)
Query: 107 SLWRLYNNLEPNSPL-RYHVYYHVIELAARVGFVREVFTGVEQLRKEFANCPPSNEQMQK 165
SL+ LYN L SP + VY ++LAA + + + ++ + +
Sbjct: 143 SLFSLYNLL--GSPYAKAFVYKKALDLAAAGKAADCIIPTFKNIDSFISDWGIGKVEQRD 200
Query: 166 LYRLLHQVLKDQ---NSE---LAAKVMIELLGTYTDENA-SYAREDAIKCIATALADPNT 218
L+ ++LKDQ N E K + G+ D +A A+E+A+ I + +
Sbjct: 201 LFLAAARILKDQKGMNKEYFNFLNKYLATFDGSADDADAIGDAKEEAVAAIIEFVKSSDL 260
Query: 219 FLLDPLLTLKPVRFLEGE----LIHDLLTIFVSEKLSSYQTFYNNHKEFVHSQGLNHEQN 274
+ D LL + V LE + L+++LL IF++++L SY F + + + GL HE
Sbjct: 261 YQCD-LLNMPAVAQLEKDEKYQLVYELLKIFLTQRLDSYLEFQSANSALLKGYGLVHEDC 319
Query: 275 IKKMRILSFMQMAETNP-DLTFDEIISELQIEEKDVEAFVIEVLKTRLVRARMDQAQRTV 333
I KMR++S + ++ ++ + II L+I + +VE ++++ + +++ ++DQ + +
Sbjct: 320 ITKMRLMSLLDLSSRCAGEIPYHAIIDALKINDDEVEYWIVKAISCKILDCKVDQLNQVI 379
Query: 334 RVSNTMHRTFGREQWQQLRDVLLAWRANVHQA 365
VS R FG QWQ LR L WR N+ A
Sbjct: 380 IVSRHTERIFGMPQWQSLRSKLGVWRGNIASA 411
>01_05_0085 -
17995800-17995985,17996724-17996823,17996919-17997115,
17997836-17997916,17998046-17998492,17998774-17998920
Length = 385
Score = 52.8 bits (121), Expect = 4e-07
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 10/175 (5%)
Query: 199 SYAREDAIKCIATALADPNTFLLDPLLTLKPVRFLEG---ELIHDLLTIFVSEKLSSYQT 255
S+ + A AL N + LL + L G E ++ +L F + L+ YQ
Sbjct: 195 SFKLDLAFDLSLAALLGDNIYNFGELLAHPIINSLIGTKVEWVYHMLQAFNTGNLALYQE 254
Query: 256 FYNNHKEFVHSQGL---NHEQNIKKMRILSFMQMAETNP--DLTFD-EIISE-LQIEEKD 308
H + +Q N + ++K+ IL M++ T P D T +I+E ++ D
Sbjct: 255 LCKVHNAALSAQPALVQNERKLLEKINILCLMEIIFTRPSEDRTIPLSVIAERTKLSISD 314
Query: 309 VEAFVIEVLKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRANVH 363
VE +++ L L+ +D+ TV VS R G Q + LR+ L AW VH
Sbjct: 315 VEYLLMKSLSVHLIEGIIDEVDSTVHVSWVQPRVLGIPQVKALRERLDAWVGKVH 369
>03_02_0154 +
5967512-5967658,5968206-5968652,5968766-5968846,
5969058-5969075,5969552-5969748,5969844-5969943,
5970676-5970861
Length = 391
Score = 48.8 bits (111), Expect = 7e-06
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 7/135 (5%)
Query: 236 ELIHDLLTIFVSEKLSSYQTFYNNHKEFVHSQGL---NHEQNIKKMRILSFMQM--AETN 290
E ++ +L F + L+ YQ H + +Q N + ++K+ IL M++ + +
Sbjct: 241 EWVYHMLQAFNTGNLALYQELCRVHNAALSAQPALVQNERKLLEKINILCLMEIIFSRAS 300
Query: 291 PDLTFD-EIISE-LQIEEKDVEAFVIEVLKTRLVRARMDQAQRTVRVSNTMHRTFGREQW 348
D T +I+E ++ DVE +++ L L+ +D+ TV VS R G Q
Sbjct: 301 EDRTIPLSVIAERTKLSISDVEYLLMKSLSVHLIEGIIDEVDSTVHVSWVQPRVLGIPQV 360
Query: 349 QQLRDVLLAWRANVH 363
+ LR+ L AW VH
Sbjct: 361 KALRERLDAWVGKVH 375
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 35.9 bits (79), Expect = 0.055
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 241 LLTIFVSEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKMRILSFMQMAETNPDL-TFDEII 299
+L I SE Y+ F+ N+ +F+ + ++N K++ L +++N +L + DE +
Sbjct: 742 ILGISCSENRDDYERFWENYGKFLKLGCMEDKENHKRIAPLLRFFSSQSNEELISLDEYV 801
Query: 300 SELQIEEKDV 309
++ E+KD+
Sbjct: 802 ENMKPEQKDI 811
>07_03_0438 -
18200329-18200430,18201203-18201335,18201964-18202034,
18202377-18202466,18203200-18203288,18203886-18203961,
18204094-18204264
Length = 243
Score = 34.3 bits (75), Expect = 0.17
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 209 IATALADPNTFLLDPLLTLKPVRFLEGELIHDLLTIFVSEKLSSYQTFYNNHKEFVHSQG 268
+ A + P F LL+L + L G L + +L +Y T + +
Sbjct: 34 VLEATSHPALFAFSELLSLPALSKLTGTQYASSLDVL---RLFAYGTLKDYKSNSGNLPA 90
Query: 269 LNHEQNIKKMRILSFMQMAETNPDLTFDEIISELQIEE-KDVEAFVI 314
L +Q ++K++ LS + +AE+ L +D+++ EL + +++E F+I
Sbjct: 91 LLPDQ-VRKLKQLSVLTLAESTKVLPYDQLMQELDVSNVRELEDFLI 136
>05_03_0132 -
8786518-8786827,8786897-8787164,8787296-8788005,
8788060-8788346,8788761-8789033
Length = 615
Score = 32.7 bits (71), Expect = 0.51
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 104 ALQSLWRLYNNLEPNSPLRYHVYYHVIELAARVGFVREVFTG-VEQLRKEFANCPPSNEQ 162
A + L YN L P S R H ++ AAR F + +G VE + K +N S EQ
Sbjct: 181 AWERLQDFYNGLTPTS--RDH-----LDTAARGAFFSKTVSGAVELIEKIVSNMGWSEEQ 233
Query: 163 MQKLYRLLHQVLKDQNSELAAKVMIELLGTYTDEN 197
+Q +++H V + LAAK ++LL DE+
Sbjct: 234 LQSRQQVMHTV--KETEMLAAK--LDLLMKRLDEH 264
>01_06_1795 -
39925019-39926029,39926265-39926408,39927200-39927277,
39927722-39927838,39927925-39927981,39928492-39928623,
39928725-39928922,39929364-39929474,39929570-39929785,
39929879-39930064,39930590-39931192
Length = 950
Score = 30.7 bits (66), Expect = 2.1
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 158 PSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGTYTDENASYAREDAIKCIATA 212
P + +K + LL+++ K N E+ MIE + TD + Y E A +C+ A
Sbjct: 374 PDDTLKRKTFELLYKMTKSTNVEVIVDRMIEYMINITDHH--YKTEIASRCVELA 426
>04_04_1242 -
32016553-32016857,32017628-32017784,32017871-32018089,
32018184-32018470,32018629-32019934,32020021-32020178,
32020250-32020335,32023106-32023173,32023297-32023340,
32023418-32023490,32023605-32023684,32023774-32023867,
32023981-32024151,32024463-32024557,32025049-32025128,
32025137-32025333,32025896-32026183
Length = 1235
Score = 28.7 bits (61), Expect = 8.3
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 31 SEEKSPKGIEDDLHKIVGVCDACFKEPSESDIEAILNSIVSIMVSIPLERGENLILAFSQ 90
+E+ +P G+E LH +C A SE + A L + VS+ L RG+ + +Q
Sbjct: 283 TEQNNPVGLEVQLHITEALCPAL----SEPGLRAFLRFMTG--VSVCLNRGD--VDPKAQ 334
Query: 91 RLTKAPGPKLGMVALQSLWRLYNNLE 116
+L +A G L + + ++ + E
Sbjct: 335 QLAEAAGSSLVSIIVDHIFLCIKDAE 360
>03_06_0116 +
31773295-31773603,31773800-31773946,31774080-31774158,
31777558-31778180
Length = 385
Score = 28.7 bits (61), Expect = 8.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 87 AFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSPLRYHVY 126
AFS+R K PK + L W L+ + P +R H+Y
Sbjct: 227 AFSKRTKKGKLPKEARLKLLHWWELHYDKWPYPSVRTHIY 266
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.134 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,852,533
Number of Sequences: 37544
Number of extensions: 378364
Number of successful extensions: 923
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 9
length of query: 386
length of database: 14,793,348
effective HSP length: 83
effective length of query: 303
effective length of database: 11,677,196
effective search space: 3538190388
effective search space used: 3538190388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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