Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000903-TA|BGIBMGA000903-PA|IPR000717|Proteasome
component region PCI
(386 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 4e-28
SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.23
SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.91
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25) 31 1.2
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0) 31 1.6
SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0) 31 1.6
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 29 4.8
SB_38421| Best HMM Match : Pox_A32 (HMM E-Value=0.022) 29 6.4
SB_50960| Best HMM Match : Pkinase (HMM E-Value=0) 29 6.4
SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.5
SB_19778| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.5
SB_40028| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2) 29 8.5
SB_21430| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.5
SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42) 29 8.5
>SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 858
Score = 122 bits (295), Expect = 4e-28
Identities = 86/303 (28%), Positives = 160/303 (52%), Gaps = 23/303 (7%)
Query: 15 QALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSESDIEAILNSIVSIMV 74
+A E+R + K GA++ EE S ++D+L +I+ C CFKE +E +E+++NSI+S+++
Sbjct: 49 KAQEIRTFLKEQGADLKEE-SITPLQDELAEILECCQVCFKEDAE--LESVMNSILSLVL 105
Query: 75 SIPLERGENLILAFSQRLTKAPGPKLGMVA--LQSLWRLYNNLEPNSPLRYHVYYHVIEL 132
+P +R E + + + A L+ L L++ L P+R+ VY + +
Sbjct: 106 VVPEKRNELIKKCCDKLKANMSEDENSSAAARLRVLSVLFSGLPEKDPMRHEVYCTQLTI 165
Query: 133 AARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGT 192
AA+ V ++ T +E ++ +Q ++++RLLH L D E +K I L
Sbjct: 166 AAKASLVDDIPTELELVKGWLGLWDVDADQRRQVFRLLHGALHD---EKRSKGKIHL--- 219
Query: 193 YTDENASYAREDAIKCIATALADPNTFLLDPLLTLKPVRFLEGELIHDLLTIFVSEKLSS 252
Y D+ + A +A + T + VR LL IFVS +
Sbjct: 220 YGDQWMA----GAFGTLA-GIKRKTTGFMQGFWNYALVR-------KHLLQIFVSGDVQD 267
Query: 253 YQTFYNNHKEFVHSQGLNHEQNIKKMRILSFMQMAETNPDLTFDEIISELQIEEKDVEAF 312
Y+ FY+++ +F++S GL+HE N+KKMR+L+ M + + +++++++ ++L I ++E F
Sbjct: 268 YKKFYDSNTDFINSIGLSHEMNLKKMRVLTLMSIGKETDEISYEDLATKLGISSDEIEQF 327
Query: 313 VIE 315
+IE
Sbjct: 328 LIE 330
>SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1801
Score = 33.9 bits (74), Expect = 0.23
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Query: 142 VFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGTY-TDENASY 200
V + V + K +C P+++ ++KL++L+ + K+ E++ K + L G Y T +NA+
Sbjct: 618 VASAVLDIGKTLLDCVPTSDLVEKLFQLVSKTGKEW-KEVSKKAVSILCGPYLTADNATL 676
Query: 201 AREDAIKCIATALADPNTFL--LDPLLTLKPVRFLEGELIHDLLTIFVSEKLSSYQTFYN 258
I+ + P + +D LT+ + L+ L + EK + + +
Sbjct: 677 LDTVVFGQISLFFSHPKSHQSPVDLALTISKSDVAKRHLLLTDLKTLIKEKDFAVRVHVS 736
Query: 259 NHKEFVHSQG 268
+ KE V G
Sbjct: 737 DEKEQVQKNG 746
>SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 927
Score = 31.9 bits (69), Expect = 0.91
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 114 NLEP--NSPLRYHVYYHVIELAARVGFVREVFTGVEQLRKEFANCPPSNEQM 163
NL+P N ++ H+ V+ + + FV+++ VE+ ++E++ C S E++
Sbjct: 710 NLDPTHNGVVQQHIQTRVLNGESDLNFVKKITALVEEKKEEYSGCKDSGERI 761
>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
Length = 1508
Score = 31.5 bits (68), Expect = 1.2
Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 227 LKPVRFLEGELIHDLLTIFVSEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKMRILSFMQM 286
+K V FLE H+ ++ E +Y + + H + + K++ +L F++
Sbjct: 415 VKLVSFLEA---HEWASVLHYEG-GAYYIYLLPTSQLTHDLAITDYHSPKRLHVLMFVKR 470
Query: 287 AETNP---DLTFDEIISELQIEEKDVEAFVIEVLKTRLVRARMDQAQRTVRV 335
P D++F+E+ SE+++ K +E + + ++ Q + +VRV
Sbjct: 471 ERMLPPYQDVSFEEVTSEIELGRKMMEELRTKKDIELSICRKLQQKENSVRV 522
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 31.1 bits (67), Expect = 1.6
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 12 LEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSESDIEAILNSIVS 71
L+D ELR SLGA + +E L ++ G+C+ E + E + N V
Sbjct: 2972 LDDMITELRNAEISLGASLMGTPDLDQLESQLEEVKGLCED--MEGKQELFENLKNKGVD 3029
Query: 72 IMVSIPLE 79
+M IP E
Sbjct: 3030 MMEKIPEE 3037
>SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)
Length = 965
Score = 31.1 bits (67), Expect = 1.6
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 142 VFTGV-EQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGTYTDENASY 200
++TGV QL L RL HQ D++S+L+ V + L G +TD S
Sbjct: 814 LYTGVARQLPSNVHMLTLETSNQYALIRLEHQFEADEDSKLSMPVNVSLQGLFTDLEVSK 873
Query: 201 ARE 203
E
Sbjct: 874 VEE 876
>SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)
Length = 887
Score = 31.1 bits (67), Expect = 1.6
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 142 VFTGV-EQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGTYTDENASY 200
++TGV QL L RL HQ D++S+L+ V + L G +TD S
Sbjct: 802 LYTGVARQLPSNVHMLTLETSNQYALIRLEHQFEADEDSKLSMPVNVSLQGLFTDLEVSK 861
Query: 201 ARE 203
E
Sbjct: 862 VEE 864
>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
Length = 2478
Score = 29.5 bits (63), Expect = 4.8
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 147 EQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGTYTDENASYAREDAI 206
+Q ++ A+ +++ + L + L +EL KV ELL D+ + ++ +AI
Sbjct: 1285 KQFQQHVASLKSESQRSKTLLENVRNELTKTKAELT-KVQAELLNVKNDQQKAQSQMEAI 1343
Query: 207 KCIATALADPNTFLLDPL 224
K +T++ N +D L
Sbjct: 1344 KSQSTSVEGKNQAEVDAL 1361
>SB_38421| Best HMM Match : Pox_A32 (HMM E-Value=0.022)
Length = 1144
Score = 29.1 bits (62), Expect = 6.4
Identities = 20/87 (22%), Positives = 33/87 (37%)
Query: 140 REVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGTYTDENAS 199
+E F V+ + A+ P E ++ +H + + NS +A +I + G
Sbjct: 861 KETFRVVQHVGSPAASEPQGREGLRARAEGIHTPVPESNSAWSASSVIGVAGLLVSSIGL 920
Query: 200 YAREDAIKCIATALADPNTFLLDPLLT 226
Y R + T N DPL T
Sbjct: 921 YTRRRELAAAFTRTPAVNQRATDPLAT 947
>SB_50960| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 632
Score = 29.1 bits (62), Expect = 6.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 200 YAREDAIKCIATALADPNTFLLDPLLTLKPVRFLEGELIHDLLTIFV 246
Y+ + +A L+ P FL+ P LT+ ++ +E E +L T+F+
Sbjct: 416 YSGRNCSPILARLLSLPKLFLIPPRLTITILQMIEMECFKELNTMFL 462
Score = 29.1 bits (62), Expect = 6.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 200 YAREDAIKCIATALADPNTFLLDPLLTLKPVRFLEGELIHDLLTIFV 246
Y+ + +A L+ P FL+ P LT+ ++ +E E +L T+F+
Sbjct: 542 YSGRNCSPILARLLSLPKLFLIPPRLTITILQMIEMECFKELNTMFL 588
>SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 28.7 bits (61), Expect = 8.5
Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 230 VRFLEGELIHDLLTIFVSEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKMRI----LSFMQ 285
VR EG IF+ E +SY + +N+ + V + + R+ + M
Sbjct: 36 VRTTEGAFARLERNIFLGETFASYVSVHNDSNQSVKDIVIKTDLQTSSQRLTLSGAANMP 95
Query: 286 MAETNPDLTFDEIISELQIEEKDVEAFVIEVLKTRLVRARM 326
+A+ +P ++D++I +++E V V + L +M
Sbjct: 96 VAKLDPQKSYDQVIHH-EVKELGTHILVCAVSYSSLAGEKM 135
>SB_19778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 28.7 bits (61), Expect = 8.5
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 76 IPLERGENLILAFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSPLRYHVYYHVIELAAR 135
I + RG L+L Q + + P P G L RL +EPN P R V +V EL+
Sbjct: 369 IIIYRGVELLLHDCQTVRRIPIP--GTEELPKWDRLAITVEPNLPTREDVRENVCELSLV 426
Query: 136 VG 137
+G
Sbjct: 427 LG 428
>SB_40028| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2)
Length = 130
Score = 28.7 bits (61), Expect = 8.5
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 247 SEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKMRILSFMQMAETN 290
+E+L+SYQT Y N F Q LN + K++ L ++ ETN
Sbjct: 10 AERLASYQT-YKNPLMFRAQQILNSGNSTKRVPWLDSLRKRETN 52
>SB_21430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 815
Score = 28.7 bits (61), Expect = 8.5
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 152 EFANCPPSNEQMQKLYRLLHQVLKDQNSELAAK---VMIELLGTYTDENASYAREDAIK 207
EF P E + RLL Q+ DQ+SELA + + LG Y D N R + +K
Sbjct: 294 EFKLKSPDVEDRLAVTRLLSQMFSDQSSELAIQNKSLWQSYLGRYLDINVD-VRVECVK 351
>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
Length = 870
Score = 28.7 bits (61), Expect = 8.5
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 260 HKEFVHSQGLNHEQNIKKMRILSFMQMAETNPDLTFDEIISELQI--EEKDVEAFVIEVL 317
H+E + HE ++ RI A + D E+++ EE E V
Sbjct: 583 HEEATREVRITHEPATREDRITH--DHARREIGIVHDHTTREVRVAHEEATREVRVAHEQ 640
Query: 318 KTRLVRARMDQAQRTVRVSNTMHR 341
TR VR +QA R VRV++ R
Sbjct: 641 ATREVRITHEQATREVRVAHEQER 664
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.134 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,503,764
Number of Sequences: 59808
Number of extensions: 437990
Number of successful extensions: 1214
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1202
Number of HSP's gapped (non-prelim): 18
length of query: 386
length of database: 16,821,457
effective HSP length: 83
effective length of query: 303
effective length of database: 11,857,393
effective search space: 3592790079
effective search space used: 3592790079
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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