Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000903-TA|BGIBMGA000903-PA|IPR000717|Proteasome
component region PCI
(386 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70855-1|AAB09161.1| 390|Caenorhabditis elegans Hypothetical pr... 173 2e-43
Z49130-8|CAA88971.1| 387|Caenorhabditis elegans Hypothetical pr... 48 1e-05
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical... 32 0.79
L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical p... 30 2.4
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr... 30 3.2
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis... 29 4.2
L12018-5|AAU87822.1| 557|Caenorhabditis elegans Twik family of ... 29 4.2
Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z81039-3|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 29 5.6
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro... 29 5.6
AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal t... 29 5.6
AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal t... 29 5.6
AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein ... 29 5.6
AF068709-12|AAO26013.1| 304|Caenorhabditis elegans Serpentine r... 29 5.6
AL021175-4|CAA15971.1| 356|Caenorhabditis elegans Hypothetical ... 29 7.3
>U70855-1|AAB09161.1| 390|Caenorhabditis elegans Hypothetical
protein K08F11.3 protein.
Length = 390
Score = 173 bits (421), Expect = 2e-43
Identities = 115/379 (30%), Positives = 201/379 (53%), Gaps = 16/379 (4%)
Query: 6 VFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSES-DIEA 64
VF I Q ELR+Y L S + P G + ++ +C PS S D++
Sbjct: 9 VFAYIDDVKQLQELRQY---LNKHDSVKLDPNGPSETAQNMIEICSTLNVLPSWSQDVDL 65
Query: 65 ILNSIVSIMVSIPLERGENLILAFSQRLT----KAPG-PKLGMVALQSLWRLYNNLEPNS 119
+LNSI S++V +P E+ E ++ +F + + K G +A++ L LY
Sbjct: 66 VLNSISSLIVVVPGEKCEPVVDSFIKNVAPQFYKGTGWASHAGIAVRVLSNLYKGYSNFH 125
Query: 120 PLRYHVYYHVIELAARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQ-VLKDQN 178
++ ++ ++++ A + E+ +E L+ F E +++ R +H+ +L DQ
Sbjct: 126 TVQEKIFKALVDMCAEARLIGELECNLETLQDRFNTWKTPVEGQREILRAVHRALLVDQR 185
Query: 179 SELAAKVMIELLGTYTDENASYAREDAIKCIATALADPNTFLLDPLLTLKPVRFLE--GE 236
+ AAKVM LLGTYT+++A+ AR+DA++C+ TA+ DP +F D L L V+ L+
Sbjct: 186 VDQAAKVMTALLGTYTEKDAAAARDDAMECVRTAVVDPKSFSFDHLERLSAVKALKTSDP 245
Query: 237 LIHDLLTIFVSEKLSSYQTFYNNHKEFVHSQGLNHEQNI--KKMRILSFMQMAETNPDLT 294
L+ L +F+S L Y+ F + +FV ++ L ++ I KK+R+L+ M +AE +++
Sbjct: 246 LMFTALELFISGTLKDYKEFVAKNPKFV-TEHLKVDETILLKKIRLLTLMSLAEEKNEIS 304
Query: 295 FDEIISELQI-EEKDVEAFVIEVLKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQQLRD 353
DE+ +L I ++ +E FVI+ ++ + ++++ RT+ VS+ HR FG EQW L
Sbjct: 305 LDELAKQLDILADETLEEFVIDAIQVNAISGKINEMARTLIVSSYQHRRFGTEQWVLLEK 364
Query: 354 VLLAWRANVHQAHEAMKSV 372
L AN+ Q H + V
Sbjct: 365 RLKVLIANLKQTHNNVHEV 383
>Z49130-8|CAA88971.1| 387|Caenorhabditis elegans Hypothetical
protein T06D8.8 protein.
Length = 387
Score = 47.6 bits (108), Expect = 1e-05
Identities = 36/158 (22%), Positives = 74/158 (46%), Gaps = 6/158 (3%)
Query: 212 ALADPNTFLLDPLLTLKPVRFLEGELIHDLLTIFVSEKLSSYQTFYNNHKEFVHSQGLNH 271
AL N LL ++ LEG ++ + ++ F++ ++ L
Sbjct: 213 ALLGENVHNFGELLAHPILKSLEGTRERWIVDVLLAFNSGDLTRFFSLEGDWGGWDDLKK 272
Query: 272 EQNI--KKMRILSFMQMAETNP----DLTFDEIISELQIEEKDVEAFVIEVLKTRLVRAR 325
+++ K+R+++ M++A + P ++F EI ++ QI +VE V++ L L+R
Sbjct: 273 QKDFLTAKIRLMAVMELAVSRPTKARSVSFKEIATKCQIPFDEVEFLVMKALSKDLIRGD 332
Query: 326 MDQAQRTVRVSNTMHRTFGREQWQQLRDVLLAWRANVH 363
++Q ++ V V+ R Q Q+ + AWR +V+
Sbjct: 333 INQVEQVVYVTWVQPRVLDNPQIMQMATRISAWRNDVN 370
>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
protein Y51A2D.15 protein.
Length = 1222
Score = 31.9 bits (69), Expect = 0.79
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 148 QLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSELAAKV--MIELLGTYTDENASYARE 203
+LR+ C N Q+ +L + L+Q + + N +L++K+ + +L TY +EN + +R+
Sbjct: 980 ELRRAHDTCHNKNNQIDELKKQLNQKISEVN-KLSSKIEALSQLNRTYNEENRNLSRQ 1036
>L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical
protein C14B9.8 protein.
Length = 1226
Score = 30.3 bits (65), Expect = 2.4
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 140 REVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGT 192
+++ G+ ++E CP +NE+++K+ + D NS A+ +I LG+
Sbjct: 873 KQITVGIASKKEEVITCPKTNEELEKIMNRAYG--DDANSFTLAQEIIVYLGS 923
>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical
protein F21C10.7 protein.
Length = 2541
Score = 29.9 bits (64), Expect = 3.2
Identities = 24/107 (22%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 246 VSEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKM--RILSFMQMAETNPDLTFDEIISELQ 303
V E++ +QT V + + ++ ++++ RI SF A+ + T + + E Q
Sbjct: 598 VIEEIQMWQTDVLEFIGKVDNSTVTKKEEVEEIQKRIASFKSAADMHKS-TLETLKEENQ 656
Query: 304 IEEKDVEAFVIEVLKTRLVRARMDQAQRTVRVSNTMHRTFGREQWQQ 350
EE+ + + + KT V+ R+DQ + V +++ + + WQ+
Sbjct: 657 NEEQ-ISRINVLIDKTDYVKTRLDQLSQKVELTSLLKIVEDVQIWQE 702
>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
transmembrane conductanceregulator homolog protein 1
protein.
Length = 1247
Score = 29.5 bits (63), Expect = 4.2
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 9 DISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFK 55
DI L +A +LR Y KSL + + SP+ + ++ V VC A K
Sbjct: 1117 DIWLAIEACQLREYVKSLPDGLHQMVSPEKMSNEQKCQVNVCRALLK 1163
>L12018-5|AAU87822.1| 557|Caenorhabditis elegans Twik family of
potassium channelsprotein 7 protein.
Length = 557
Score = 29.5 bits (63), Expect = 4.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 262 EFVHSQGLNHEQNIKKMRILSFMQMA 287
E HS G+ H+ NI++ RI +F+ +A
Sbjct: 351 EHCHSHGMGHDMNIEEKRIPAFLVLA 376
>Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical
protein W09D6.6 protein.
Length = 801
Score = 29.1 bits (62), Expect = 5.6
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 3/128 (2%)
Query: 109 WRLYNNLEPNSPLRYHVYYHVIELA-ARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLY 167
W+ Y EP S R + +++IELA V F + TG+ + N +K+
Sbjct: 152 WKKY--FEPTSKNRGDLTFYIIELALVTVVFFFTIVTGLFNFSGCSSRESAWNNLSKKVV 209
Query: 168 RLLHQVLKDQNSELAAKVMIELLGTYTDENASYAREDAIKCIATALADPNTFLLDPLLTL 227
+ + ++ L +V+ L + + K I LA P+TF L
Sbjct: 210 TVAPYIWPTKSISLQLRVVFCLFLLIIGRLINVSLPILSKWIVDELATPDTFQYSLLFLA 269
Query: 228 KPVRFLEG 235
++FL+G
Sbjct: 270 TFLKFLQG 277
>Z81039-3|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical
protein C25D7.3 protein.
Length = 2150
Score = 29.1 bits (62), Expect = 5.6
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 157 PPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGTYTDENASYAREDAIKCIATALADP 216
P ++ +YRL Q L++ N E ++ E L TDE + + ++ D
Sbjct: 288 PQCEQEFWDVYRLQMQWLEEDNIEENITMLRENLSKVTDEEFNRSVYIMRPENRASIHDD 347
Query: 217 NTFLLDPLLTLKPV 230
TF D + LKP+
Sbjct: 348 VTFTTDAEINLKPI 361
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
T28C6.9 protein.
Length = 1861
Score = 29.1 bits (62), Expect = 5.6
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 10 ISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSESDIEAIL--N 67
+SLEDQ LEL + + E+ +EK+ K D K+ + + + E D EA N
Sbjct: 1256 LSLEDQNLELEERLQEMEEELLDEKNKKKEVD--AKVEQKSEENWGDWGEDDAEAATESN 1313
Query: 68 SIVSIMVSIPLERGENL 84
+VS + S E + L
Sbjct: 1314 VVVSTLQSTVAELQDRL 1330
>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger
protein protein.
Length = 2150
Score = 29.1 bits (62), Expect = 5.6
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 157 PPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGTYTDENASYAREDAIKCIATALADP 216
P ++ +YRL Q L++ N E ++ E L TDE + + ++ D
Sbjct: 288 PQCEQEFWDVYRLQMQWLEEDNIEENITMLRENLSKVTDEEFNRSVYIMRPENRASIHDD 347
Query: 217 NTFLLDPLLTLKPV 230
TF D + LKP+
Sbjct: 348 VTFTTDAEINLKPI 361
>AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 29.1 bits (62), Expect = 5.6
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 3/128 (2%)
Query: 109 WRLYNNLEPNSPLRYHVYYHVIELA-ARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLY 167
W+ Y EP S R + +++IELA V F + TG+ + N +K+
Sbjct: 152 WKKY--FEPTSKNRGDLTFYIIELALVTVVFFFTIVTGLFNFSGCSSRESAWNNLSKKVV 209
Query: 168 RLLHQVLKDQNSELAAKVMIELLGTYTDENASYAREDAIKCIATALADPNTFLLDPLLTL 227
+ + ++ L +V+ L + + K I LA P+TF L
Sbjct: 210 TVAPYIWPTKSISLQLRVVFCLFLLIIGRLINVSLPILSKWIVDELATPDTFQYSLLFLA 269
Query: 228 KPVRFLEG 235
++FL+G
Sbjct: 270 TFLKFLQG 277
>AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 29.1 bits (62), Expect = 5.6
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 3/128 (2%)
Query: 109 WRLYNNLEPNSPLRYHVYYHVIELA-ARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLY 167
W+ Y EP S R + +++IELA V F + TG+ + N +K+
Sbjct: 152 WKKY--FEPTSKNRGDLTFYIIELALVTVVFFFTIVTGLFNFSGCSSRESAWNNLSKKVV 209
Query: 168 RLLHQVLKDQNSELAAKVMIELLGTYTDENASYAREDAIKCIATALADPNTFLLDPLLTL 227
+ + ++ L +V+ L + + K I LA P+TF L
Sbjct: 210 TVAPYIWPTKSISLQLRVVFCLFLLIIGRLINVSLPILSKWIVDELATPDTFQYSLLFLA 269
Query: 228 KPVRFLEG 235
++FL+G
Sbjct: 270 TFLKFLQG 277
>AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein
protein.
Length = 801
Score = 29.1 bits (62), Expect = 5.6
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 3/128 (2%)
Query: 109 WRLYNNLEPNSPLRYHVYYHVIELA-ARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLY 167
W+ Y EP S R + +++IELA V F + TG+ + N +K+
Sbjct: 152 WKKY--FEPTSKNRGDLTFYIIELALVTVVFFFTIVTGLFNFSGCSSRESAWNNLSKKVV 209
Query: 168 RLLHQVLKDQNSELAAKVMIELLGTYTDENASYAREDAIKCIATALADPNTFLLDPLLTL 227
+ + ++ L +V+ L + + K I LA P+TF L
Sbjct: 210 TVAPYIWPTKSISLQLRVVFCLFLLIIGRLINVSLPILSKWIVDELATPDTFQYSLLFLA 269
Query: 228 KPVRFLEG 235
++FL+G
Sbjct: 270 TFLKFLQG 277
>AF068709-12|AAO26013.1| 304|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 57 protein.
Length = 304
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 61 DIEAILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSP 120
++ A+LN + I++ I + NL++ ++L+K + A+Q W + N+L N
Sbjct: 192 NVTAVLNVVYFILIIIIVVSESNLVV--KRKLSKISMTYCSIFAVQLTWTIVNSLNSNFS 249
Query: 121 L 121
L
Sbjct: 250 L 250
>AL021175-4|CAA15971.1| 356|Caenorhabditis elegans Hypothetical
protein Y6E2A.5 protein.
Length = 356
Score = 28.7 bits (61), Expect = 7.3
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 166 LYRLLHQVLKDQNSELAAKV--MIELLGTYTDENASYAREDAIKCIATALADPNT 218
L +L +VL+ Q S++A K+ IE LG Y ++ S+AR ++ L P+T
Sbjct: 268 LDKLFLKVLQKQISQVATKLCNFIEELGHYENDKESFARIQNLESHIDPLEIPST 322
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.134 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,709,040
Number of Sequences: 27539
Number of extensions: 350844
Number of successful extensions: 1042
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1030
Number of HSP's gapped (non-prelim): 20
length of query: 386
length of database: 12,573,161
effective HSP length: 83
effective length of query: 303
effective length of database: 10,287,424
effective search space: 3117089472
effective search space used: 3117089472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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