GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000903-TA|BGIBMGA000903-PA|IPR000717|Proteasome
component region PCI
         (386 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     26   0.62 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   5.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.7  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   7.7  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.8 bits (54), Expect = 0.62
 Identities = 16/63 (25%), Positives = 27/63 (42%)

Query: 238 IHDLLTIFVSEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKMRILSFMQMAETNPDLTFDE 297
           +HD L I   E+L+  +   N H+EF        E     +  +  M   + N DL+  +
Sbjct: 466 VHDTLQIQPQEQLTLSKVTSNYHEEFQSLNNAVGEMEATNVTNILSMDNTQYNLDLSLPQ 525

Query: 298 IIS 300
           + S
Sbjct: 526 LDS 528


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 65  ILNSIVSIMVSIPLERGENLILAFSQRLT 93
           ++NS+  ++  +P E GE + L  S  L+
Sbjct: 226 LINSVALLVFYVPSESGEKVTLGISALLS 254


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 1   MQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSP 36
           +Q P ++   SL D+A +  + F++L  + S E  P
Sbjct: 625 LQAPPLYDTNSLMDEAYKPHKKFRALRQKDSAEAEP 660


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 246 VSEKLSSYQTFYNNHKEFVHSQGLNHEQNIKKM 278
           + +++ S      NHK   H Q   +EQ  K+M
Sbjct: 37  ICKRVYSSLNSLRNHKSIYHRQHSKNEQQRKEM 69


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 259 NHKEFVHSQGLNHEQNIKKM 278
           NHK F +   +N ++N+K M
Sbjct: 494 NHKPFTYHIVVNSDKNVKGM 513


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 259 NHKEFVHSQGLNHEQNIKKM 278
           NHK F +   +N ++N+K M
Sbjct: 120 NHKPFTYHIVVNSDKNVKGM 139


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,625
Number of Sequences: 429
Number of extensions: 3876
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 386
length of database: 140,377
effective HSP length: 59
effective length of query: 327
effective length of database: 115,066
effective search space: 37626582
effective search space used: 37626582
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)