Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000902-TA|BGIBMGA000902-PA|undefined
(115 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14972| Best HMM Match : UPF0066 (HMM E-Value=5.7) 29 0.93
SB_22826| Best HMM Match : F5_F8_type_C (HMM E-Value=7.9e-09) 28 2.2
SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.8
SB_53052| Best HMM Match : U79_P34 (HMM E-Value=2.7) 27 5.0
SB_38471| Best HMM Match : Krr1 (HMM E-Value=4.7) 27 5.0
SB_20292| Best HMM Match : DUF495 (HMM E-Value=3.7) 27 5.0
SB_14259| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_58628| Best HMM Match : Tenui_NCP (HMM E-Value=4.5) 26 6.6
SB_32248| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_43172| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_22272| Best HMM Match : HNF-1_N (HMM E-Value=1) 26 6.6
SB_51389| Best HMM Match : Lac_bphage_repr (HMM E-Value=1.7) 26 8.7
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
>SB_14972| Best HMM Match : UPF0066 (HMM E-Value=5.7)
Length = 465
Score = 29.1 bits (62), Expect = 0.93
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 45 TSMMAQNGPVQTQANGPQ---HSFPSLHNTSSFAGQTADFNLDFLDNMPST 92
TS +A NGPV Q +GP + P+ N S G T+ L ++P T
Sbjct: 388 TSTLALNGPVAIQKHGPHTLCWNTPTSQNQDSRLGNTSTLALKGNTSLPYT 438
>SB_22826| Best HMM Match : F5_F8_type_C (HMM E-Value=7.9e-09)
Length = 1296
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 60 GPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLNDI 114
G FPS+ T +A + LD+MP +A ++ A + N +D +D+
Sbjct: 337 GAHLRFPSVDATLRGQDISASVYQEILDSMPDKEAPSVLAGLVQNILDEDIPDDV 391
>SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 82 NLDFLDNMPSTDASNITAQELLNSIDNSFLND 113
N F+DN T +TA+E++N++ S LN+
Sbjct: 81 NERFVDNNDFTSRKMLTAEEMINAVFESNLNN 112
>SB_53052| Best HMM Match : U79_P34 (HMM E-Value=2.7)
Length = 1130
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 60 GPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLNDI 114
G FPS+ T A + LD+MP +A + A + N +D +D+
Sbjct: 71 GAHLRFPSVDATLRSQDINASVYQEILDSMPDKEAPAVLAGLVQNILDEDIPDDV 125
>SB_38471| Best HMM Match : Krr1 (HMM E-Value=4.7)
Length = 536
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 86 LDNMPSTDASNITAQELLNSIDNSFLNDI 114
L ++ TD SNI Q L SI ++L+DI
Sbjct: 75 LSDIYPTDLSNIYPQTCLTSIPKTYLSDI 103
>SB_20292| Best HMM Match : DUF495 (HMM E-Value=3.7)
Length = 895
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 60 GPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLNDI 114
G FPS+ T +A + LD+MP +A + A + N +D +D+
Sbjct: 82 GAHLRFPSVDATLRGQDISASVYQEILDSMPDKEAPAVLAGLVQNILDEDIPDDV 136
>SB_14259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 404
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 78 TADFNLDFLDNMPSTDASN 96
TAD +LD LDN P+T +S+
Sbjct: 369 TADISLDALDNPPATTSSS 387
>SB_58628| Best HMM Match : Tenui_NCP (HMM E-Value=4.5)
Length = 479
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 60 GPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLNDI 114
G FPS+ T +A + LD+MP +A + A + N +D +D+
Sbjct: 82 GAHLRFPSVDATLRGQEISASVYQEILDSMPDKEAPAVLAGLVQNILDEDIPDDV 136
>SB_32248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1023
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 60 GPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLNDI 114
G FPS+ T +A + LD+MP +A + A + N +D +D+
Sbjct: 82 GAHLRFPSVDATLRGQEISASVYQEILDSMPDKEAPAVLAGLVQNILDEDIPDDV 136
>SB_43172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 60 GPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLNDI 114
G FPS+ T +A + LD+MP +A + A + N +D +D+
Sbjct: 82 GTHLRFPSVDATLRGRDISAGVYQEILDSMPDKEAPAVLAGLVQNILDGDIPDDV 136
>SB_22272| Best HMM Match : HNF-1_N (HMM E-Value=1)
Length = 266
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 60 GPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLNDI 114
G FPS+ T +A + LD+MP +A + A + N +D +D+
Sbjct: 82 GAHLRFPSVDATLRGQDISAGVYQEILDSMPDKEAPAVLAGLVQNILDEDIPDDV 136
>SB_51389| Best HMM Match : Lac_bphage_repr (HMM E-Value=1.7)
Length = 343
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 68 LHNTSSFAGQTADFNLDFLDNMPSTDASNITAQEL 102
L + SFA DFLDN P D +N T +E+
Sbjct: 177 LGSKCSFAELLTIHAADFLDNNPDFDYANETLKEI 211
>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4538
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 46 SMMAQNGPVQTQANGPQHSFPSLHNTSSFAGQTADFNLDFLDN 88
S ++++ P+Q + GP+ P + S G D N+ F+DN
Sbjct: 4409 SFLSKSHPMQARTQGPRTHSP-YNGRKSIFGSQWDNNVLFVDN 4450
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.311 0.125 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,090
Number of Sequences: 59808
Number of extensions: 78950
Number of successful extensions: 180
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 15
length of query: 115
length of database: 16,821,457
effective HSP length: 73
effective length of query: 42
effective length of database: 12,455,473
effective search space: 523129866
effective search space used: 523129866
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)
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