GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000902-TA|BGIBMGA000902-PA|undefined
         (115 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    23   0.58 
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    23   0.58 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   0.77 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   1.8  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    20   5.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    20   5.4  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    19   9.4  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    19   9.4  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 0.58
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 82  NLDFLDNMPSTDASNITA--QELLNSIDNSFLNDIL 115
           N+ F   +PS  + N+ +    ++N++D+ FLNDIL
Sbjct: 172 NVLFYPFLPSDVSYNLFSFVPLVVNALDHLFLNDIL 207


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 23.4 bits (48), Expect = 0.58
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 82  NLDFLDNMPSTDASNITA--QELLNSIDNSFLNDIL 115
           N+ F   +PS  + N+ +    ++N++D+ FLNDIL
Sbjct: 128 NVLFYPFLPSDVSYNLFSFVPLVVNALDHLFLNDIL 163


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 0.77
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 42  PMPTSMMAQNGPVQTQANGPQHSFPSLHNTSSFAGQTADFNLDFLDNMP 90
           P+P  M +Q    Q Q   P ++  S  +T+S    ++D N+   + MP
Sbjct: 408 PVPP-MQSQIINPQPQITSPSNTNTSTSSTNSNKPNSSDLNMLIKETMP 455


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 42  PMPTSMMAQNGPVQTQANGPQHSFPSLHN 70
           P PTS+M +  P     +    + P  HN
Sbjct: 313 PTPTSVMTELYPSPVPGHSTSPNLPLTHN 341


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 46  SMMAQNGPVQTQANGPQHSFPSLHNTSSFAGQTA 79
           ++M     VQT+++   +SF   +++ S   Q A
Sbjct: 461 AIMTPPASVQTESSDNYNSFHQFYSSESSQNQVA 494


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 46  SMMAQNGPVQTQANGPQHSFPSLHNTSSFAGQTA 79
           ++M     VQT+++   +SF   +++ S   Q A
Sbjct: 409 AIMTPPASVQTESSDNYNSFHQFYSSESSQNQVA 442


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
          protein.
          Length = 287

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 45 TSMMAQNGPVQTQANGPQHSF 65
          T+M      V   AN P HS+
Sbjct: 8  TNMYRHQQAVAAPANAPMHSW 28


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
          protein.
          Length = 249

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 45 TSMMAQNGPVQTQANGPQHSF 65
          T+M      V   AN P HS+
Sbjct: 8  TNMYRHQQAVAAPANAPMHSW 28


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.125    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,066
Number of Sequences: 317
Number of extensions: 547
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 115
length of database: 114,650
effective HSP length: 49
effective length of query: 66
effective length of database: 99,117
effective search space:  6541722
effective search space used:  6541722
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.1 bits)
S2: 38 (19.4 bits)