GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000902-TA|BGIBMGA000902-PA|undefined
         (115 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    27   0.75 
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    27   0.99 
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    25   3.0  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   3.0  
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    25   4.0  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   4.0  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    24   5.3  
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    24   7.0  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   9.2  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    23   9.2  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    23   9.2  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    23   9.2  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    23   9.2  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 0.75
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 77  QTADFNLDFLDNMPSTDASNITAQELLNSIDNS 109
           ++ DF   F+D  P + AS I   +++N ID S
Sbjct: 281 RSCDFGKSFIDECPESPASEIII-DIINKIDES 312


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 0.99
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 42  PMPTSMMAQNGPVQTQANGPQHSFPSLHNTSS 73
           P PTS+   +  +  +A+    SFPSL +T S
Sbjct: 365 PSPTSLRVAHPIIPQRASPASQSFPSLQDTPS 396


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 42  PMPTSMMAQNGPVQTQANGPQ 62
           P PTS  + NG ++  AN P+
Sbjct: 426 PFPTSSSSTNGTLEPNANSPK 446


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 51  NGPVQTQANGPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASN 96
           NGP+ + +   + S PS  N S F     +     LDN PS+D SN
Sbjct: 124 NGPLDSLS---KPSVPSNFN-SMFPSSKQEGPSPLLDNQPSSDLSN 165


>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 58  ANGPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTD 93
           A+G  H+ P+    SS++G + D  L ++     T+
Sbjct: 371 ASGTNHTLPTYGYASSYSGVSTDSFLKYITTQELTE 406


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 68  LHNTSSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLND 113
           +HN +S +GQ     LDF+ + P TD   ++ +  L S +N  LND
Sbjct: 329 VHNQNS-SGQHQ--TLDFVASKPVTDTPELSKENTLVSSEN--LND 369


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 64  SFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQELLNS 105
           SF  + + + F     DF+ +   ++P TD  +I +   L S
Sbjct: 201 SFTKIEDINLFDFSNIDFDSELFQSLPDTDKYSILSAARLRS 242


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 57  QANGPQHSFPSLHNTSSFAGQTADFNLDFLDNMPST 92
           +A  PQH    +H  SS    T   +L  + ++PST
Sbjct: 218 RATHPQHFIRFIHTLSSLIKCTTSVHLICMCSVPST 253


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 38  AQTGPMPTSMMAQNGPVQTQANGPQHSFPSLHNTSSFAGQTADF 81
           A T     +  A+N  +   AN P  S  S    S+   Q+AD+
Sbjct: 136 ASTSTAVPTTEARNTSITEPANSPSSSSSSASTKSTATTQSADY 179


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)

Query: 40  TGPMPTSMMAQNGPVQTQANGPQHSFPSLHN 70
           TGP  T   A N P + QA GP  S  ++++
Sbjct: 783 TGPNET---ANNPPAEPQAGGPGKSVKAIYD 810


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 60  GPQHSFPSLHNTSSFAGQTADFNLDFLDN 88
           GP HSF +      F  Q+ D    ++DN
Sbjct: 430 GPAHSFETEDPVLKFVSQSYDDLFPYMDN 458


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 56  TQANGPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLND 113
           T  N    S PS  +  +F     D  +  ++ + S +      +E L ++DN  L+D
Sbjct: 163 THLNSRDDSNPSSCDRETFFLSDEDSEISLMEGLSSIENGYPDEKETLAALDNVKLSD 220


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 44  PTSMMAQNGPVQTQANGPQ----HSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNI 97
           P S+   N    T   G +    HSF SL   +S +  T++F+  FL++  +    N+
Sbjct: 75  PVSLKTGNHTGTTTRGGSKENWVHSFSSLQQQNSKSAWTSEFSEVFLNSSENDRFRNL 132


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.125    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 391,381
Number of Sequences: 5004
Number of extensions: 13588
Number of successful extensions: 47
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 13
length of query: 115
length of database: 2,362,478
effective HSP length: 64
effective length of query: 51
effective length of database: 2,042,222
effective search space: 104153322
effective search space used: 104153322
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 48 (23.4 bits)