GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000902-TA|BGIBMGA000902-PA|undefined
         (115 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0141 - 11151344-11151531,11151926-11152275,11153119-111532...    27   3.6  
06_03_0741 - 24016204-24016298,24016408-24016525,24016805-240169...    27   4.8  
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057...    27   4.8  
06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832...    26   6.4  
09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786...    26   8.4  
08_02_1198 + 25204896-25206755                                         26   8.4  

>10_06_0141 -
           11151344-11151531,11151926-11152275,11153119-11153274,
           11153505-11153674,11155431-11155589,11157139-11157447,
           11157550-11157750
          Length = 510

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 71  TSSFAGQTADFNLDFLDNMPSTDASNIT 98
           TSSF G T D N+D++    S + S +T
Sbjct: 412 TSSFNGLTVDQNIDYVRTNRSDELSTVT 439


>06_03_0741 -
          24016204-24016298,24016408-24016525,24016805-24016903,
          24016992-24017117,24017200-24017277,24017366-24017554,
          24018186-24018338,24018785-24018898,24019576-24019761,
          24019845-24019970,24020053-24020248,24020338-24020438,
          24020533-24020610,24020707-24020952,24021063-24022253
          Length = 1031

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 42 PMPTSMMAQNGPVQTQANGPQHSFPSLHNTSSFAGQTA 79
          P P        PV   A  P  +FP  HN+++ A Q A
Sbjct: 47 PAPHQYTTGRRPVSASALQPSDTFPRRHNSATPAEQAA 84


>04_04_0198 +
           23502657-23502900,23505228-23505298,23505690-23505727,
           23505905-23507693
          Length = 713

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/53 (30%), Positives = 23/53 (43%)

Query: 42  PMPTSMMAQNGPVQTQANGPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDA 94
           P P   +A   P    ANG   + P   N +  AG     N+  L+ +P+ DA
Sbjct: 655 PPPAPPIAGAAPPPPMANGAAAAAPPGGNPAPPAGPQPGVNMFDLNELPNEDA 707


>06_02_0066 -
           11081446-11081544,11081639-11081846,11083122-11083257,
           11083339-11083541,11083616-11083765,11083848-11083964,
           11084623-11085119
          Length = 469

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 42  PMPTSMMAQNGPVQTQANGPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQE 101
           P   ++   + P Q+ +NGPQ    S  N S     TAD +        +  +S  T +E
Sbjct: 361 PPANNLNRYSTPPQSTSNGPQSGEASTSNQSPKGHATADPSAPTFYARGAV-SSVTTTRE 419

Query: 102 LLNSIDNSFLNDI 114
           L +S+  ++ N I
Sbjct: 420 LESSLQKAYENAI 432


>09_02_0362 +
           7860088-7860197,7861606-7861636,7861738-7861801,
           7861922-7862052,7863575-7863784,7863891-7863956,
           7864868-7865075,7866270-7866325,7866406-7867128,
           7868246-7868299,7868667-7868695,7869501-7869585,
           7870032-7870202,7870246-7870827
          Length = 839

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 17/62 (27%), Positives = 23/62 (37%)

Query: 48  MAQNGPVQTQANGPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQELLNSID 107
           ++Q+  V T  +G     P      S   Q    N  F  N P T  SNI     L  I 
Sbjct: 370 LSQHRSVATIISGGMPGIPMSGTGQSIGSQQVVQNTAFGSNTPITGNSNIAVSSSLGGIQ 429

Query: 108 NS 109
           ++
Sbjct: 430 SN 431


>08_02_1198 + 25204896-25206755
          Length = 619

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 76  GQTADFNLDFLDNMPSTDASN--ITAQEL 102
           G T+DF +D ++N+   D S+  I A+EL
Sbjct: 12  GDTSDFEVDGVENLTENDVSDEEIDAEEL 40


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.125    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,596
Number of Sequences: 37544
Number of extensions: 70093
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 6
length of query: 115
length of database: 14,793,348
effective HSP length: 73
effective length of query: 42
effective length of database: 12,052,636
effective search space: 506210712
effective search space used: 506210712
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)