GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000902-TA|BGIBMGA000902-PA|undefined
         (115 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14972| Best HMM Match : UPF0066 (HMM E-Value=5.7)                   29   0.93 
SB_22826| Best HMM Match : F5_F8_type_C (HMM E-Value=7.9e-09)          28   2.2  
SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_53052| Best HMM Match : U79_P34 (HMM E-Value=2.7)                   27   5.0  
SB_38471| Best HMM Match : Krr1 (HMM E-Value=4.7)                      27   5.0  
SB_20292| Best HMM Match : DUF495 (HMM E-Value=3.7)                    27   5.0  
SB_14259| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_58628| Best HMM Match : Tenui_NCP (HMM E-Value=4.5)                 26   6.6  
SB_32248| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_43172| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_22272| Best HMM Match : HNF-1_N (HMM E-Value=1)                     26   6.6  
SB_51389| Best HMM Match : Lac_bphage_repr (HMM E-Value=1.7)           26   8.7  
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  

>SB_14972| Best HMM Match : UPF0066 (HMM E-Value=5.7)
          Length = 465

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 45  TSMMAQNGPVQTQANGPQ---HSFPSLHNTSSFAGQTADFNLDFLDNMPST 92
           TS +A NGPV  Q +GP     + P+  N  S  G T+   L    ++P T
Sbjct: 388 TSTLALNGPVAIQKHGPHTLCWNTPTSQNQDSRLGNTSTLALKGNTSLPYT 438


>SB_22826| Best HMM Match : F5_F8_type_C (HMM E-Value=7.9e-09)
          Length = 1296

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 60  GPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLNDI 114
           G    FPS+  T      +A    + LD+MP  +A ++ A  + N +D    +D+
Sbjct: 337 GAHLRFPSVDATLRGQDISASVYQEILDSMPDKEAPSVLAGLVQNILDEDIPDDV 391


>SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 82  NLDFLDNMPSTDASNITAQELLNSIDNSFLND 113
           N  F+DN   T    +TA+E++N++  S LN+
Sbjct: 81  NERFVDNNDFTSRKMLTAEEMINAVFESNLNN 112


>SB_53052| Best HMM Match : U79_P34 (HMM E-Value=2.7)
          Length = 1130

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 60  GPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLNDI 114
           G    FPS+  T       A    + LD+MP  +A  + A  + N +D    +D+
Sbjct: 71  GAHLRFPSVDATLRSQDINASVYQEILDSMPDKEAPAVLAGLVQNILDEDIPDDV 125


>SB_38471| Best HMM Match : Krr1 (HMM E-Value=4.7)
          Length = 536

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 86  LDNMPSTDASNITAQELLNSIDNSFLNDI 114
           L ++  TD SNI  Q  L SI  ++L+DI
Sbjct: 75  LSDIYPTDLSNIYPQTCLTSIPKTYLSDI 103


>SB_20292| Best HMM Match : DUF495 (HMM E-Value=3.7)
          Length = 895

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 60  GPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLNDI 114
           G    FPS+  T      +A    + LD+MP  +A  + A  + N +D    +D+
Sbjct: 82  GAHLRFPSVDATLRGQDISASVYQEILDSMPDKEAPAVLAGLVQNILDEDIPDDV 136


>SB_14259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 404

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 78  TADFNLDFLDNMPSTDASN 96
           TAD +LD LDN P+T +S+
Sbjct: 369 TADISLDALDNPPATTSSS 387


>SB_58628| Best HMM Match : Tenui_NCP (HMM E-Value=4.5)
          Length = 479

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 60  GPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLNDI 114
           G    FPS+  T      +A    + LD+MP  +A  + A  + N +D    +D+
Sbjct: 82  GAHLRFPSVDATLRGQEISASVYQEILDSMPDKEAPAVLAGLVQNILDEDIPDDV 136


>SB_32248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1023

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 60  GPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLNDI 114
           G    FPS+  T      +A    + LD+MP  +A  + A  + N +D    +D+
Sbjct: 82  GAHLRFPSVDATLRGQEISASVYQEILDSMPDKEAPAVLAGLVQNILDEDIPDDV 136


>SB_43172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 60  GPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLNDI 114
           G    FPS+  T      +A    + LD+MP  +A  + A  + N +D    +D+
Sbjct: 82  GTHLRFPSVDATLRGRDISAGVYQEILDSMPDKEAPAVLAGLVQNILDGDIPDDV 136


>SB_22272| Best HMM Match : HNF-1_N (HMM E-Value=1)
          Length = 266

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 60  GPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLNDI 114
           G    FPS+  T      +A    + LD+MP  +A  + A  + N +D    +D+
Sbjct: 82  GAHLRFPSVDATLRGQDISAGVYQEILDSMPDKEAPAVLAGLVQNILDEDIPDDV 136


>SB_51389| Best HMM Match : Lac_bphage_repr (HMM E-Value=1.7)
          Length = 343

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 68  LHNTSSFAGQTADFNLDFLDNMPSTDASNITAQEL 102
           L +  SFA        DFLDN P  D +N T +E+
Sbjct: 177 LGSKCSFAELLTIHAADFLDNNPDFDYANETLKEI 211


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 46   SMMAQNGPVQTQANGPQHSFPSLHNTSSFAGQTADFNLDFLDN 88
            S ++++ P+Q +  GP+   P  +   S  G   D N+ F+DN
Sbjct: 4409 SFLSKSHPMQARTQGPRTHSP-YNGRKSIFGSQWDNNVLFVDN 4450


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.311    0.125    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,090
Number of Sequences: 59808
Number of extensions: 78950
Number of successful extensions: 180
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 15
length of query: 115
length of database: 16,821,457
effective HSP length: 73
effective length of query: 42
effective length of database: 12,455,473
effective search space: 523129866
effective search space used: 523129866
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)