GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000902-TA|BGIBMGA000902-PA|undefined
         (115 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    23   2.1  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           22   6.3  
AJ439398-1|CAD28124.1|  208|Anopheles gambiae hypothetical prote...    22   6.3  
AJ441131-2|CAD29631.1|  208|Anopheles gambiae hypothetical prote...    21   8.4  

>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 82  NLDFLDNMPSTDASNITAQELLN 104
           NL    N P TD   IT QE++N
Sbjct: 439 NLSPTINTPETDPVPITRQEIIN 461



 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 88  NMPSTDASNITAQELLN 104
           N P TD   IT QE++N
Sbjct: 384 NTPETDPVPITRQEIIN 400


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)

Query: 60   GPQHSFPSLHNTSSFAGQTA 79
            GP HS PS H T   +G T+
Sbjct: 1525 GPNHSSPSNH-TDDSSGSTS 1543


>AJ439398-1|CAD28124.1|  208|Anopheles gambiae hypothetical protein
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 41  GPMPTSMMAQNGPVQTQANGPQHSFPSLHNTSS 73
           G   +  + Q GP  T  N PQ+ F S +N ++
Sbjct: 117 GSSNSRFLRQFGPQFTGTNRPQNWFYSRNNNNN 149


>AJ441131-2|CAD29631.1|  208|Anopheles gambiae hypothetical protein
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 41  GPMPTSMMAQNGPVQTQANGPQHSFPSLHNTSS 73
           G   +S + Q GP  T    PQ+ F S +N ++
Sbjct: 117 GSSNSSFLRQFGPQFTGTKRPQNWFYSRNNNNN 149


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.311    0.125    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,955
Number of Sequences: 2123
Number of extensions: 2448
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 115
length of database: 516,269
effective HSP length: 56
effective length of query: 59
effective length of database: 397,381
effective search space: 23445479
effective search space used: 23445479
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)