GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000902-TA|BGIBMGA000902-PA|undefined
         (115 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X54251-1|CAA38152.1| 1596|Drosophila melanogaster nuclear protei...    39   0.001
BT023751-1|AAZ41759.1| 1594|Drosophila melanogaster RH56202p pro...    39   0.001
AE013599-1817|AAF58300.2| 1594|Drosophila melanogaster CG8118-PB...    39   0.001
AE013599-1816|AAF58299.1| 1594|Drosophila melanogaster CG8118-PA...    39   0.001
AF215703-1|AAF43004.1| 5322|Drosophila melanogaster KISMET-L lon...    31   0.28 
AE014134-62|AAF51527.3| 5322|Drosophila melanogaster CG3696-PA, ...    31   0.28 
AE014298-2761|AAF48878.1|  324|Drosophila melanogaster CG12609-P...    27   7.9  
AE014298-2760|AAN09474.1|  293|Drosophila melanogaster CG12609-P...    27   7.9  

>X54251-1|CAA38152.1| 1596|Drosophila melanogaster nuclear protein
            protein.
          Length = 1596

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 72   SSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLN 112
            +S    + DF L+FLDN+P    SN + Q+L+NS+DN   N
Sbjct: 1551 NSVVANSNDFGLEFLDNLPVD--SNFSTQDLINSLDNDNFN 1589


>BT023751-1|AAZ41759.1| 1594|Drosophila melanogaster RH56202p protein.
          Length = 1594

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 72   SSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLN 112
            +S    + DF L+FLDN+P    SN + Q+L+NS+DN   N
Sbjct: 1549 NSVVANSNDFGLEFLDNLPVD--SNFSTQDLINSLDNDNFN 1587


>AE013599-1817|AAF58300.2| 1594|Drosophila melanogaster CG8118-PB,
            isoform B protein.
          Length = 1594

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 72   SSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLN 112
            +S    + DF L+FLDN+P    SN + Q+L+NS+DN   N
Sbjct: 1549 NSVVANSNDFGLEFLDNLPVD--SNFSTQDLINSLDNDNFN 1587


>AE013599-1816|AAF58299.1| 1594|Drosophila melanogaster CG8118-PA,
            isoform A protein.
          Length = 1594

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 72   SSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLN 112
            +S    + DF L+FLDN+P    SN + Q+L+NS+DN   N
Sbjct: 1549 NSVVANSNDFGLEFLDNLPVD--SNFSTQDLINSLDNDNFN 1587


>AF215703-1|AAF43004.1| 5322|Drosophila melanogaster KISMET-L long
           isoform protein.
          Length = 5322

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 43  MPTSMMAQNGPVQTQANGPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQEL 102
           +P S   Q    Q Q    Q S PS H+ SS   +TA+ N      + + D++N ++   
Sbjct: 807 VPQSQQQQVSQPQQQTQQQQPSTPS-HHLSSILNETANSNDSSTLAVAANDSNNSSSNSS 865

Query: 103 LNSIDNS 109
            NSI N+
Sbjct: 866 TNSIVNN 872


>AE014134-62|AAF51527.3| 5322|Drosophila melanogaster CG3696-PA,
           isoform A protein.
          Length = 5322

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 43  MPTSMMAQNGPVQTQANGPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQEL 102
           +P S   Q    Q Q    Q S PS H+ SS   +TA+ N      + + D++N ++   
Sbjct: 807 VPQSQQQQVSQPQQQTQQQQPSTPS-HHLSSILNETANSNDSSTLAVAANDSNNSSSNSS 865

Query: 103 LNSIDNS 109
            NSI N+
Sbjct: 866 TNSIVNN 872


>AE014298-2761|AAF48878.1|  324|Drosophila melanogaster CG12609-PB,
           isoform B protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 55  QTQANGPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASN 96
           Q+ AN  + + P    +  FA   +DFNL  +    STDAS+
Sbjct: 135 QSNANAKKQNIP---RSERFAKLWSDFNLKSMTKRESTDASS 173


>AE014298-2760|AAN09474.1|  293|Drosophila melanogaster CG12609-PA,
           isoform A protein.
          Length = 293

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 55  QTQANGPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASN 96
           Q+ AN  + + P    +  FA   +DFNL  +    STDAS+
Sbjct: 104 QSNANAKKQNIP---RSERFAKLWSDFNLKSMTKRESTDASS 142


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.311    0.125    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,150,513
Number of Sequences: 52641
Number of extensions: 143054
Number of successful extensions: 503
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 499
Number of HSP's gapped (non-prelim): 8
length of query: 115
length of database: 24,830,863
effective HSP length: 75
effective length of query: 40
effective length of database: 20,882,788
effective search space: 835311520
effective search space used: 835311520
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)