GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000902-TA|BGIBMGA000902-PA|undefined
         (115 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77133-1|CAB00865.1|  969|Caenorhabditis elegans Hypothetical pr...    28   1.9  
Z29560-12|CAL22705.1|  395|Caenorhabditis elegans Hypothetical p...    27   4.3  
Z82265-6|CAB05170.2|  537|Caenorhabditis elegans Hypothetical pr...    26   7.6  
Z11505-7|CAA77581.1|  918|Caenorhabditis elegans Hypothetical pr...    26   7.6  
AC024859-17|AAN84887.1|  105|Caenorhabditis elegans Hypothetical...    25   10.0 

>Z77133-1|CAB00865.1|  969|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 969

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 70  NTSSFAGQTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLN 112
           N+ +F     DFN   + N+PST      + +  ++ D SF N
Sbjct: 640 NSQTFDDDIMDFNFHSMQNLPSTSEMQFKSSD--DNFDGSFSN 680


>Z29560-12|CAL22705.1|  395|Caenorhabditis elegans Hypothetical
           protein K03H1.13 protein.
          Length = 395

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 64  SFPSLHNTSSFAGQTAD-FNLDFLDNMPSTDASNITAQELLNSIDNS 109
           +F +L N  S      + +  D L+ +PST    ITA +++ +++N+
Sbjct: 95  AFGTLPNCKSILETKLEIYKNDLLEKLPSTGGIMITASDVIENMENA 141


>Z82265-6|CAB05170.2|  537|Caenorhabditis elegans Hypothetical
           protein F02H6.1 protein.
          Length = 537

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 54  VQTQANGPQHSFPSLHNTSSFAGQTADFNLD 84
           V + A  PQH++P   N  + A    DF+ +
Sbjct: 101 VDSTAQNPQHAWPDQENQDNIAAGGEDFDAE 131


>Z11505-7|CAA77581.1|  918|Caenorhabditis elegans Hypothetical
           protein F59B2.12 protein.
          Length = 918

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 58  ANGPQHSFPSLHNTSSFAGQTADF--NLDFLDNMPSTDASNITAQELLNSIDNSFLNDIL 115
           A G + S       +S +G  ADF  NL+ L N   T  SN T      S D +   +++
Sbjct: 260 AQGNKKSQNYSKKAASASGSNADFESNLESLKNADGTSMSNSTGNFNNTSYDKATAEEVM 319


>AC024859-17|AAN84887.1|  105|Caenorhabditis elegans Hypothetical
          protein Y71H2AM.20b protein.
          Length = 105

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 42 PMPTSMMAQNGPVQTQANGPQHSFPSLHNTSS 73
          PMP    AQ+G    + N  +   PS  NTS+
Sbjct: 42 PMPPRAPAQHGMFAFKVNSEKKMIPSAANTST 73


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.311    0.125    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,771
Number of Sequences: 27539
Number of extensions: 67502
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 175
Number of HSP's gapped (non-prelim): 5
length of query: 115
length of database: 12,573,161
effective HSP length: 72
effective length of query: 43
effective length of database: 10,590,353
effective search space: 455385179
effective search space used: 455385179
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 53 (25.4 bits)