GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000902-TA|BGIBMGA000902-PA|undefined
         (115 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63820.1 68414.m07222 hypothetical protein                          27   2.3  
At5g58080.1 68418.m07268 two-component responsive regulator fami...    26   5.4  
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil...    26   5.4  
At2g22970.1 68415.m02729 serine carboxypeptidase S10 family prot...    26   5.4  
At1g78980.1 68414.m09209 leucine-rich repeat transmembrane prote...    26   5.4  
At4g36090.1 68417.m05137 oxidoreductase, 2OG-Fe(II) oxygenase fa...    25   9.4  

>At1g63820.1 68414.m07222 hypothetical protein
          Length = 265

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 54  VQTQANGPQHSFPSLHNTSSFAGQTAD---FNLDFLDNMPSTDASNITAQELLNSIDNSF 110
           +QT      +SFP+     +F     +   FN  F D     D+SN   Q LLNS ++SF
Sbjct: 76  LQTLTLTHTNSFPNFSGFENFDTVKTEQLLFNSPF-DAPFMEDSSNFQNQNLLNSPEDSF 134

Query: 111 LND 113
            +D
Sbjct: 135 FSD 137


>At5g58080.1 68418.m07268 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
          Length = 581

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/65 (26%), Positives = 29/65 (44%)

Query: 44  PTSMMAQNGPVQTQANGPQHSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNITAQELL 103
           P++  + N   Q  +  P HS+    NT+ F   +   NL FL +  +   +N+     L
Sbjct: 382 PSNSASPNISFQGLSRFPGHSWQGNLNTTRFPPSSLPLNLAFLPDQVTCAGNNLGDCTSL 441

Query: 104 NSIDN 108
            S +N
Sbjct: 442 VSAEN 446


>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative
          similar to SP|Q9ULA0 Aspartyl aminopeptidase (EC
          3.4.11.21) {Homo sapiens}; contains Pfam profile
          PF02127: Aminopeptidase I zinc metalloprotease (M18)
          Length = 526

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 63 HSFPSLHNTSSFAGQTADFNLDFLDNMPSTDASNIT 98
          HS PS+ N SSF  Q+  F   +L   P    S+++
Sbjct: 11 HSLPSIFNPSSFLSQSLSFP-TYLHRSPFRSFSSVS 45


>At2g22970.1 68415.m02729 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase I precursor
           (SP:P37890) [Oryza sativa]
          Length = 433

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 45  TSMMAQNGPVQTQANGPQHSFPSLHNTSSFAGQTADFNLDFLD 87
           T ++ QNGP+  ++     S PSL +T+    +TA  N+ FLD
Sbjct: 84  TGLLFQNGPLALKSEVYNGSVPSLVSTTYSWTKTA--NIIFLD 124


>At1g78980.1 68414.m09209 leucine-rich repeat transmembrane protein
           kinase, putative similar to leucine-rich repeat
           transmembrane protein kinase 2 GI:3360291 from [Zea
           mays]
          Length = 693

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 77  QTADFNLDFLDNMPSTDASNITAQELLNSIDNSFLNDI 114
           +T DF+L+ L        +N+T+ + L+  DN F  DI
Sbjct: 165 ETLDFSLNKLSGKLPQSFANLTSLKKLHLQDNRFTGDI 202


>At4g36090.1 68417.m05137 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to At2g17970, At2g17960; contains
           PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 385

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 86  LDNMPSTDASNITAQELLNSIDNSF 110
           +DNM S +  N+ ++E+ N +DN +
Sbjct: 70  VDNMESEEVDNMESEEVDNKMDNIY 94


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.311    0.125    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,875,196
Number of Sequences: 28952
Number of extensions: 60396
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 6
length of query: 115
length of database: 12,070,560
effective HSP length: 72
effective length of query: 43
effective length of database: 9,986,016
effective search space: 429398688
effective search space used: 429398688
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 53 (25.4 bits)