Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000901-TA|BGIBMGA000901-PA|undefined
         (154 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117195-14|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   3.4  
Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical pr...    27   4.4  

>AL117195-14|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18 protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/36 (36%), Positives = 16/36 (44%)

Query: 106  RPYPQHPRQYSPEWRHVLMQQQAASRQQFPHHHQGS 141
            +P  Q  +Q S        QQQ   + Q  HHHQ S
Sbjct: 1327 QPQQQQQQQASMSMSQATYQQQHQQQNQMHHHHQTS 1362


>Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical
           protein E01G4.4 protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 100 MRRAAPRPYPQHPRQYSPEWRHVLMQQQAASRQQFPHHHQ 139
           M   APR   Q  +QY  + ++ +MQ Q   +QQ  +H Q
Sbjct: 64  MNAYAPR--QQQQQQYQQQQQNYMMQHQQQHQQQHHYHQQ 101


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.133    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,857
Number of Sequences: 27539
Number of extensions: 65000
Number of successful extensions: 296
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 3
length of query: 154
length of database: 12,573,161
effective HSP length: 76
effective length of query: 78
effective length of database: 10,480,197
effective search space: 817455366
effective search space used: 817455366
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)