GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000901-TA|BGIBMGA000901-PA|undefined
         (154 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   2.2  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   5.1  

>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 237

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 109 PQHPRQYSPEWRHVLMQQQAASRQQFPHHH 138
           P+   ++SP W+ ++ + Q  S  + P HH
Sbjct: 15  PEQWEKWSPRWKSIVFRTQYESIFKNPKHH 44


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 102  RAAPRPYPQHPRQYSPEWRHVLMQ 125
            RA   P+PQ+PR +  ++ H  +Q
Sbjct: 1937 RAFDNPWPQYPRVFRVDYGHAEVQ 1960


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.133    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 375,428
Number of Sequences: 5004
Number of extensions: 9549
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 2
length of query: 154
length of database: 2,362,478
effective HSP length: 67
effective length of query: 87
effective length of database: 2,027,210
effective search space: 176367270
effective search space used: 176367270
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 50 (24.2 bits)