GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000901-TA|BGIBMGA000901-PA|undefined
         (154 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL445309-4|CAI40956.1|  137|Homo sapiens chromosome 6 open readi...    29   6.8  

>AL445309-4|CAI40956.1|  137|Homo sapiens chromosome 6 open reading
           frame 86 protein.
          Length = 137

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 101 RRAAPRPYPQHPRQYSPEWRH 121
           RR   +P   HPR Y P WRH
Sbjct: 71  RRGHVQPLRLHPRVYLPPWRH 91


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.324    0.133    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,047,631
Number of Sequences: 224733
Number of extensions: 439249
Number of successful extensions: 1310
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1309
Number of HSP's gapped (non-prelim): 1
length of query: 154
length of database: 73,234,838
effective HSP length: 84
effective length of query: 70
effective length of database: 54,357,266
effective search space: 3805008620
effective search space used: 3805008620
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)