GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000901-TA|BGIBMGA000901-PA|undefined
         (154 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   9.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   9.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 105  PRPYPQHPRQYSPEWRHVLMQQQAASRQQ 133
            P+   Q P+Q  P+ +    QQQ    QQ
Sbjct: 1517 PQQQSQQPQQQQPQPQQQQQQQQQQQPQQ 1545



 Score = 21.0 bits (42), Expect = 5.6
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 108 YPQHPRQYSPEWRHVLMQQQAASRQQFPHHHQ 139
           +PQ   Q  P+ +    QQQ   +QQ     Q
Sbjct: 821 HPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQ 852



 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)

Query: 125  QQQAASRQQFP 135
            QQQA+S+QQ P
Sbjct: 1310 QQQASSQQQIP 1320


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 11/36 (30%), Positives = 12/36 (33%), Gaps = 4/36 (11%)

Query: 107 PYPQHPRQYSPEW----RHVLMQQQAASRQQFPHHH 138
           P+  HP QY P       H             PHHH
Sbjct: 318 PHQHHPSQYHPHRGSSPHHQHGNHTMGPTMGPPHHH 353


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 119 WRHVLMQQQAASRQQFPHHHQGSFF 143
           +R +  + +    + F H +QG FF
Sbjct: 401 YRKLPREMRQRITEYFEHRYQGKFF 425


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 119 WRHVLMQQQAASRQQFPHHHQGSFF 143
           +R +  + +    + F H +QG FF
Sbjct: 369 YRKLPREMRQRITEYFEHRYQGKFF 393


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.133    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,019
Number of Sequences: 429
Number of extensions: 1617
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 154
length of database: 140,377
effective HSP length: 53
effective length of query: 101
effective length of database: 117,640
effective search space: 11881640
effective search space used: 11881640
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 40 (20.2 bits)