GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000901-TA|BGIBMGA000901-PA|undefined
         (154 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18150.1 68417.m02697 hypothetical protein                          30   0.60 
At3g05470.1 68416.m00599 formin homology 2 domain-containing pro...    30   0.60 
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont...    30   0.60 
At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family...    28   3.2  

>At4g18150.1 68417.m02697 hypothetical protein 
          Length = 762

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 108 YPQHPRQYSPEWRHV--LMQQQAASRQQFPHHHQGSFFFIAIPKNNMAV 154
           YP H  Q  P +R    L  QQ +S+QQ    H G   +++ P ++ AV
Sbjct: 690 YPGHQNQQPPGFRQAQQLQHQQQSSQQQQQQQHYGGHGYVS-PYHSQAV 737


>At3g05470.1 68416.m00599 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 884

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 103 AAPRPYPQHPRQYSPEWRHVLMQQQAASRQQFPHHHQGSFFFIAIP 148
           A PRP P H R+  P+  H L Q +   R+   H   G+F  I +P
Sbjct: 119 APPRPIPPHLRRPLPQRTHPLEQPEIQRRK---HEKGGTFKKILVP 161


>At1g58190.1 68414.m06605 leucine-rich repeat family protein contains
            leucine rich-repeat (LRR) domains Pfam:PF00560,
            INTERPRO:IPR001611; contains similarity to Cf-2.2
            [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 1784

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 112  PRQYSPEWRHVLM-QQQAASRQQFPHHHQGSFFFI 145
            PRQYSP++  VLM   + AS+ ++  + Q SF F+
Sbjct: 1565 PRQYSPDYTGVLMFNVEFASKSRYDSYTQESFNFM 1599


>At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family
           protein similar to proline-rich protein precursor
           GB:AAC34889 [Glycine max]
          Length = 388

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/37 (32%), Positives = 16/37 (43%)

Query: 104 APRPYPQHPRQYSPEWRHVLMQQQAASRQQFPHHHQG 140
           AP P   HP    P + H+ +   +   QQ P H  G
Sbjct: 178 APPPASHHPTSQQPPFHHLDIPASSTQLQQQPMHSGG 214


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.133    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,790
Number of Sequences: 28952
Number of extensions: 59392
Number of successful extensions: 197
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 195
Number of HSP's gapped (non-prelim): 4
length of query: 154
length of database: 12,070,560
effective HSP length: 75
effective length of query: 79
effective length of database: 9,899,160
effective search space: 782033640
effective search space used: 782033640
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)