Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000900-TA|BGIBMGA000900-PA|undefined
         (364 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   1.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   4.6  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 4/27 (14%)

Query: 296 PRHTPPPIDHLHMSQQQQLHVTQPHHN 322
           PRH  PP D LH      +H T  +HN
Sbjct: 32  PRHFNPPSDKLH----HPIHQTVIYHN 54


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 53  KRQAKKSERKPDLPAISSNLHSSVVHVQ 80
           KR+ KK++++ D P  ++N    V+ V+
Sbjct: 267 KRKEKKAQKEKDKPNSTTNGSPDVIKVE 294


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,894
Number of Sequences: 317
Number of extensions: 3410
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 364
length of database: 114,650
effective HSP length: 58
effective length of query: 306
effective length of database: 96,264
effective search space: 29456784
effective search space used: 29456784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)