GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000900-TA|BGIBMGA000900-PA|undefined
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    31   0.19 
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    28   2.4  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   4.2  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    27   5.5  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   7.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   7.3  

>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 32  ACEQQNLETSALQKRFLEGKAKRQAKKSERKPD---LPAISSNLHSSVVHVQQKFGCGDY 88
           A E Q LE    +KR LE K KR+  + E K +   + A    L  +   ++      DY
Sbjct: 15  AIENQKLEEEWRKKRRLEKKRKRKILEEEEKAEERNIDACRLYLMGNTPELKSCNSIDDY 74

Query: 89  EPPAKLQCGGGGVTGEALTKFSVEIV 114
           E   K++ G  G+    L K +  +V
Sbjct: 75  EILEKIEEGSYGIVYRGLDKSTNTLV 100


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 14/56 (25%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 8   QRRIETYRRRQSECVPRFDQSFSGACEQQNLETSA-LQKRFLEGKAKRQAKKSERK 62
           Q+++E  R+       R   +FS + + +++   A LQ+++L+ K+K+  +++ER+
Sbjct: 434 QKKLE--RKAGKAVAARMGDAFSNSLDDESMNLYAELQEQWLKDKSKKARRRAERE 487


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 19/69 (27%), Positives = 26/69 (37%)

Query: 275 AEQHQQATGGDWARYRGYGYRPRHTPPPIDHLHMSQQQQLHVTQPHHNLQVDCELVSGRK 334
           +  H Q T    +  R Y  RP  TPP           Q   T   +  +    LVS + 
Sbjct: 235 SSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQTVKTTTSNASRQPSPLVSSKS 294

Query: 335 NENGIRIHT 343
            +N IR H+
Sbjct: 295 TDNIIRSHS 303


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 8  QRRIETYRRRQSECVPRFDQSFSGACEQQNLETSALQKRFLEGKAKRQAKKSERKPDLPA 67
          Q  I T ++R+S+ +          C++   + + L+K+  EG  K++    ++   + A
Sbjct: 11 QTTIPTQQKRKSKKMEELLSKQREECKELQSKITNLRKQLKEGNKKQKRALQQKISQMEA 70

Query: 68 ISSNLHSSVVHVQQKFGCGDYE 89
            S  H++    +QK   GD E
Sbjct: 71 DLSQKHAT---ERQKLDKGDEE 89


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 296 PRHTPPPIDHLHMSQQQQLHVTQPH 320
           P+  PPPI H H+S  Q +  + P+
Sbjct: 591 PQQLPPPI-HSHLSDDQHIQYSYPN 614


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 3    KIGGFQRRIETYRRRQSECVPRFDQSFSGACEQQNLETSALQKRFLEGKAKRQAKKSERK 62
            ++GG  +    +   +S   P   + F  AC+Q    +   + R     AK++   S+ K
Sbjct: 1546 RVGGLGQMPGWWYSVESSATPHLLKQFEQACQQALSSSQRTRARLRARSAKQRFPVSQWK 1605

Query: 63   PDLPAISSNLHSSVVHVQQKFG 84
              L A++       +   QK+G
Sbjct: 1606 AKLEALT----DGCIKCSQKYG 1623


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,572,309
Number of Sequences: 5004
Number of extensions: 62338
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 7
length of query: 364
length of database: 2,362,478
effective HSP length: 74
effective length of query: 290
effective length of database: 1,992,182
effective search space: 577732780
effective search space used: 577732780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)