Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000900-TA|BGIBMGA000900-PA|undefined
(364 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1080 + 23815232-23817040 31 1.4
06_03_0082 + 16363742-16364632 30 2.5
05_02_0160 - 7194699-7195019,7195207-7195368,7195806-7195953,719... 30 3.3
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 30 3.3
01_02_0016 - 10199085-10199170,10200649-10201456 30 3.3
12_01_1110 + 11756814-11757485,11757566-11757644,11757705-117579... 29 4.4
04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733 29 5.8
03_01_0476 - 3660327-3661261,3661401-3661668 29 5.8
06_02_0315 - 14230234-14232771 29 7.7
>07_03_1080 + 23815232-23817040
Length = 602
Score = 31.1 bits (67), Expect = 1.4
Identities = 18/76 (23%), Positives = 29/76 (38%)
Query: 262 GEMSPAAQTLKHMAEQHQQATGGDWARYRGYGYRPRHTPPPIDHLHMSQQQQLHVTQPHH 321
G S + QT + H + G G Y PPP + ++ Q+ PHH
Sbjct: 35 GSRSSSHQTNASYSYYHHSSNSGGGGGGGGGYYYGGQQPPPSQYYYLEPYQEECGNAPHH 94
Query: 322 NLQVDCELVSGRKNEN 337
L +D + S + +
Sbjct: 95 QLYMDEDFSSSSSSRH 110
>06_03_0082 + 16363742-16364632
Length = 296
Score = 30.3 bits (65), Expect = 2.5
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 162 PLDCERECKAECKSEVADDEFVGL-DECAAALERDAASAFPGLADLIGEDDGDD 214
P D E E E +SE+ D+ VGL D+ LE +S L + +DD DD
Sbjct: 234 PCDGELEPPPESESELCDEGGVGLDDDDPLLLELSDSSGGGALLEPFPDDDDDD 287
>05_02_0160 -
7194699-7195019,7195207-7195368,7195806-7195953,
7196286-7196362,7196717-7196787,7196891-7196977,
7197662-7198201,7198430-7198439
Length = 471
Score = 29.9 bits (64), Expect = 3.3
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 180 DEFVGLDECAAALERDAASAFPGLADLIGEDDGDDTFEDLITEI----SEYPEFMKDFDL 235
+E + CAAA R +A P ++ ++ +GD + EDL + S Y D
Sbjct: 340 NEMARMIACAAACVRHSARRRPRMSQVVRALEGDVSLEDLNEGVRPGHSRYFGSYSSSDY 399
Query: 236 DAGKFN 241
D+G++N
Sbjct: 400 DSGQYN 405
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 29.9 bits (64), Expect = 3.3
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 104 EALTKFSVEIVQQLEFTTSAADSQPQQISTNVTVKALANAVKTXXXXXXXXXXXRIPTPL 163
EA F V+ VQQLE TT DS+ Q+ + +N V I +
Sbjct: 1665 EADQPFYVQPVQQLELTT---DSKDNQLVEAEETSSQSNIVTPEDPTAEDRVAYEIDPSV 1721
Query: 164 DCERECKAECKSEVADDEFVGLDECAAA 191
D ++ + E EV D + + +E + A
Sbjct: 1722 DIDQGHELELVEEVKDTDAIEAEETSHA 1749
>01_02_0016 - 10199085-10199170,10200649-10201456
Length = 297
Score = 29.9 bits (64), Expect = 3.3
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 189 AAALERDAASAFPGLADLIGEDDGDDTF-EDLITEISEYPEFMK 231
AAA R S P L D+I DD DD F E+ E E+ + K
Sbjct: 6 AAATARKLGSHLPRLRDIIDHDDEDDDFVEEEEEEEEEWEDMSK 49
>12_01_1110 +
11756814-11757485,11757566-11757644,11757705-11757991,
11758072-11758131,11758311-11758976
Length = 587
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 32 ACEQQNLETSALQKRFLEGKAKRQAKKSERKPDLPAISSNLHSSV 76
A ++ +TSA+ L K K + KKS+ DLPA+ ++ ++
Sbjct: 259 AGRKRKTKTSAIDPSVLAPKKKAKKKKSKLADDLPAVDPSIEQAL 303
>04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733
Length = 760
Score = 29.1 bits (62), Expect = 5.8
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 5 GGFQRRIETYRRRQSECVPRFDQSFSGACEQQNLETSALQKRFLEGKAKRQAKKSERK 62
GG Q R+ +R++ R F G +Q +Q+RFLE KR+A+++ R+
Sbjct: 286 GGSQDRLG--KRKRGAGGKRLATFFEGLIKQVVDRQEEMQRRFLETMEKREAERTARE 341
>03_01_0476 - 3660327-3661261,3661401-3661668
Length = 400
Score = 29.1 bits (62), Expect = 5.8
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 30 SGACEQQNLETSALQKRFLEGKAKRQAKKSERKPDLPAISSNLHSSVVHVQQKFGCGDYE 89
S EQ +T K G+A R+A++++ K A ++ + VH Q K G E
Sbjct: 114 SSKAEQAKEKTKEAAKG-AAGEATRRAEQAKHKTKEAAEAAGERGAEVHEQSKQGKAKVE 172
Query: 90 PPAKLQCGGG 99
AK + G G
Sbjct: 173 ETAKEKAGEG 182
>06_02_0315 - 14230234-14232771
Length = 845
Score = 28.7 bits (61), Expect = 7.7
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 164 DCERECKAECKSEVADDEFVGLDECAAALERDAASAFPGLADLIGEDDGDDTFE--DLIT 221
D ++ECK + + + G EC +L D A G D + E + +T E DL
Sbjct: 377 DTDKECKEQARDSAVSTKEAGCRECDGSL-HDGCEA--GQVDPL-ETEAVETSECGDLGE 432
Query: 222 EISEYPEFMKD 232
E SEY + +D
Sbjct: 433 EASEYGDCRED 443
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.133 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,402,351
Number of Sequences: 37544
Number of extensions: 502852
Number of successful extensions: 1358
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1353
Number of HSP's gapped (non-prelim): 11
length of query: 364
length of database: 14,793,348
effective HSP length: 83
effective length of query: 281
effective length of database: 11,677,196
effective search space: 3281292076
effective search space used: 3281292076
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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