GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000900-TA|BGIBMGA000900-PA|undefined
         (364 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_981| Best HMM Match : No HMM Matches (HMM E-Value=.)                33   0.48 
SB_11987| Best HMM Match : OTU (HMM E-Value=1.1e-24)                   31   1.1  
SB_19607| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.9  
SB_36061| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_20017| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_36453| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.8  

>SB_981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 32.7 bits (71), Expect = 0.48
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 171 AECKSEVADDEFVGLDECAAAL-----ERDAASAFPGLAD-LIGEDDGDDTFEDLITEIS 224
           A+   +V DDE++ +DE   AL       D A+   G AD + G+DDGDD   D+  +  
Sbjct: 31  ADDDDDVDDDEWMKVDESPTALVFCSRSGDVATDDDGAADDVAGDDDGDD---DVAGDDD 87

Query: 225 EYPEFMKDFDLD 236
           +  +   DFD D
Sbjct: 88  DDDDVAGDFDGD 99


>SB_11987| Best HMM Match : OTU (HMM E-Value=1.1e-24)
          Length = 1142

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 300  PPPIDHLHMSQQQQ----LHVTQPHHNLQVDCELVSGRKNENGIRIH 342
            P P  H H  QQQQ    +H+TQPH   Q   +  +G++   G R H
Sbjct: 979  PTPQPHQHQQQQQQPHHQIHLTQPH--FQAQFQPPNGQQTWRGPRPH 1023


>SB_19607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 14 YRRRQSECVPRFDQSFSGACEQQNLETSALQKRFLEGKAKRQAKKSERK 62
          +RR  +E     D S  G CE  + E   LQ+  L+ + +RQ K+ E++
Sbjct: 19 FRRLSAELEAARDGSMEGICEALSEELKELQQLLLKQELQRQKKQQEQQ 67


>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 8   QRRIETYRRRQSECVPRF---DQSFSGACEQQNLETSALQKRFLEGKAKRQAKKSERKPD 64
           QR ++ ++  +   +  F     S S     Q+ E   LQK+  +GK+ +Q K  +   D
Sbjct: 75  QRSLDCFKVNRQSTLDAFTARSPSTSATVSTQSKEKETLQKKQSKGKSNKQDKNKKNTED 134

Query: 65  LPA 67
           LP+
Sbjct: 135 LPS 137


>SB_36061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 158 RIPTPLDCERECKAECKSEVADDEFVGLDECAAALERDAASAFP-GLADLIGEDD 211
           R+   +D E +   ECK E    E    D   + LE    S FP G +   GEDD
Sbjct: 128 RVACGIDVESQMSDECKIERRRSEVASPDTVVSELEDITLSKFPAGGSPKDGEDD 182


>SB_20017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 204 ADLIGEDDGDDTFEDLI---TEISEYPEFMKDFDLDAGKF 240
           A L+GE D ++TFE+LI    ++SE+ E + D  +D   F
Sbjct: 345 AVLVGETDMEETFENLILNELDLSEFGESLLDPGVDIDDF 384


>SB_36453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 11 IETYRRRQSECVPRFDQSFSGACEQQNLETSALQKRFLEGKAKRQAKKSERKPDLPAISS 70
          I +  R QS+  P       G  E ++ E S L   F+     ++++  E KP+LP ++ 
Sbjct: 5  ISSQPRWQSDGNPVLPPDPEGPGEVES-EASILGLLFVSTNGYKRSQVKEEKPNLPFLNR 63

Query: 71 NLHSSV 76
            HSSV
Sbjct: 64 PSHSSV 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,248,473
Number of Sequences: 59808
Number of extensions: 520270
Number of successful extensions: 1407
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1402
Number of HSP's gapped (non-prelim): 11
length of query: 364
length of database: 16,821,457
effective HSP length: 83
effective length of query: 281
effective length of database: 11,857,393
effective search space: 3331927433
effective search space used: 3331927433
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)