GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000900-TA|BGIBMGA000900-PA|undefined
         (364 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81449-9|CAB03760.3|  700|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z81449-8|CAI70399.1|  705|Caenorhabditis elegans Hypothetical pr...    31   1.3  
X64415-2|CAA45761.1|  700|Caenorhabditis elegans unc-93 protein.       31   1.3  
X64415-1|CAA45760.1|  705|Caenorhabditis elegans unc-93 protein.       31   1.3  
Z69885-5|CAA93756.2|  882|Caenorhabditis elegans Hypothetical pr...    31   1.7  
AY064464-1|AAL40874.1|  882|Caenorhabditis elegans minibrain kin...    31   1.7  
AF078784-2|AAK18966.1|  258|Caenorhabditis elegans Hypothetical ...    29   5.2  
Z68299-1|CAA92609.1|  390|Caenorhabditis elegans Hypothetical pr...    28   9.1  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    28   9.1  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    28   9.1  
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ...    28   9.1  

>Z81449-9|CAB03760.3|  700|Caenorhabditis elegans Hypothetical
          protein C46F11.1b protein.
          Length = 700

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 38 LETSALQKRFLEGKAKRQAKKSERKPDLPAISSNLHSSVVHVQQKFG 84
          LE   L K  LE +A+R  K+  + P L     N+  + +H+ QKFG
Sbjct: 42 LEALGLGKEQLEEEARRHKKQRSKSPAL----ENIRKTSIHLLQKFG 84


>Z81449-8|CAI70399.1|  705|Caenorhabditis elegans Hypothetical
          protein C46F11.1a protein.
          Length = 705

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 38 LETSALQKRFLEGKAKRQAKKSERKPDLPAISSNLHSSVVHVQQKFG 84
          LE   L K  LE +A+R  K+  + P L     N+  + +H+ QKFG
Sbjct: 47 LEALGLGKEQLEEEARRHKKQRSKSPAL----ENIRKTSIHLLQKFG 89


>X64415-2|CAA45761.1|  700|Caenorhabditis elegans unc-93 protein.
          Length = 700

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 38 LETSALQKRFLEGKAKRQAKKSERKPDLPAISSNLHSSVVHVQQKFG 84
          LE   L K  LE +A+R  K+  + P L     N+  + +H+ QKFG
Sbjct: 42 LEALGLGKEQLEEEARRHKKQRSKSPAL----ENIRKTSIHLLQKFG 84


>X64415-1|CAA45760.1|  705|Caenorhabditis elegans unc-93 protein.
          Length = 705

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 38 LETSALQKRFLEGKAKRQAKKSERKPDLPAISSNLHSSVVHVQQKFG 84
          LE   L K  LE +A+R  K+  + P L     N+  + +H+ QKFG
Sbjct: 47 LEALGLGKEQLEEEARRHKKQRSKSPAL----ENIRKTSIHLLQKFG 89


>Z69885-5|CAA93756.2|  882|Caenorhabditis elegans Hypothetical
           protein T04C10.1 protein.
          Length = 882

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 301 PPIDHLHMSQQQQLHVTQP 319
           PP+ H ++ QQQQL++ QP
Sbjct: 660 PPVSHSNLQQQQQLYIQQP 678


>AY064464-1|AAL40874.1|  882|Caenorhabditis elegans minibrain kinase
           protein.
          Length = 882

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 301 PPIDHLHMSQQQQLHVTQP 319
           PP+ H ++ QQQQL++ QP
Sbjct: 660 PPVSHSNLQQQQQLYIQQP 678


>AF078784-2|AAK18966.1|  258|Caenorhabditis elegans Hypothetical
           protein H34I24.1 protein.
          Length = 258

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 18/79 (22%), Positives = 33/79 (41%)

Query: 212 GDDTFEDLITEISEYPEFMKDFDLDAGKFNXXXXXXXXXXXXTAPRPYGGGEMSPAAQTL 271
           GD +   + ++I  + E +K ++  A K                P  YG   ++P  +T+
Sbjct: 88  GDKSDYSINSKIPTFDEILKIYENRAEKIIDKATQGNTKLCENDPYCYGQRILNPGQKTI 147

Query: 272 KHMAEQHQQATGGDWARYR 290
           K   E  ++  G D A Y+
Sbjct: 148 KCKYECKEEGAGDDCADYK 166


>Z68299-1|CAA92609.1|  390|Caenorhabditis elegans Hypothetical
           protein T04B2.2 protein.
          Length = 390

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 78  HVQQKFGCGDYEPPAKL---QCGGGGVTGEALTKFSVEIVQQLEFTTSAAD 125
           HV +  G   +E P  +    C  G +    L K  V ++++L FTT AAD
Sbjct: 189 HVVKLIGVAIHEHPLMIVMEYCPNGSLLSH-LKKNKVSLIEKLRFTTEAAD 238


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
           protein.
          Length = 1829

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 15  RRRQSECVPRFDQSFSGACEQQNLETSALQKRFLEGKAKRQAKKSERK 62
           R+R+    P  DQ F    +QQ      L K   + + KR A++ E+K
Sbjct: 185 RKRRDSDAPDSDQEFEAFIKQQEQLEDDLVKDKEDARIKRAAEREEKK 232


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 15  RRRQSECVPRFDQSFSGACEQQNLETSALQKRFLEGKAKRQAKKSERK 62
           R+R+    P  DQ F    +QQ      L K   + + KR A++ E+K
Sbjct: 185 RKRRDSDAPDSDQEFEAFIKQQEQLEDDLVKDKEDARIKRAAEREEKK 232


>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
            protein Y102A11A.3 protein.
          Length = 1571

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 18   QSECVPRFDQSFSGACEQQNLETSALQKRFLEGKAKRQAKKSERKPDLPAISSN 71
            QSE + + D  F  ACE++  ET  + K   +   K     +E +  +  I  +
Sbjct: 1174 QSEDIDKLDHHFEDACERKYCETDTMLKENPDSTRKMAKNLNENESGINIIKDS 1227


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,018,070
Number of Sequences: 27539
Number of extensions: 379145
Number of successful extensions: 1155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1148
Number of HSP's gapped (non-prelim): 12
length of query: 364
length of database: 12,573,161
effective HSP length: 82
effective length of query: 282
effective length of database: 10,314,963
effective search space: 2908819566
effective search space used: 2908819566
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)