GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000900-TA|BGIBMGA000900-PA|undefined
         (364 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   9.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   9.5  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 11/42 (26%), Positives = 16/42 (38%)

Query: 281 ATGGDWARYRGYGYRPRHTPPPIDHLHMSQQQQLHVTQPHHN 322
           +T G      G+G+   H  P   H H +     H T   H+
Sbjct: 410 STPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPLAHS 451


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 210 DDGDDTFEDLITEISEYPEFMKD 232
           +D + +F DL+T+++E  +   D
Sbjct: 531 EDCNKSFNDLLTQVAELDQIYAD 553


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,567
Number of Sequences: 429
Number of extensions: 4395
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 364
length of database: 140,377
effective HSP length: 59
effective length of query: 305
effective length of database: 115,066
effective search space: 35095130
effective search space used: 35095130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)