GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000900-TA|BGIBMGA000900-PA|undefined
         (364 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela...    31   0.91 
At1g02000.1 68414.m00118 NAD-dependent epimerase/dehydratase fam...    31   0.91 
At3g20430.1 68416.m02587 expressed protein                             30   2.1  
At1g67870.1 68414.m07750 glycine-rich protein contains non-conse...    30   2.1  
At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger) fa...    29   3.7  
At1g06950.1 68414.m00738 chloroplast inner envelope protein-rela...    29   3.7  
At4g06603.1 68417.m01028 expressed protein                             29   6.4  
At5g20750.1 68418.m02466 Ulp1 protease family protein contains P...    28   8.5  
At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putat...    28   8.5  

>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
            similar to nuclear matrix constituent protein 1 (NMCP1)
            [Daucus carota] GI:2190187
          Length = 1128

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 2/129 (1%)

Query: 16   RRQSECVPRFDQSFSGACEQQNLETSALQKRFLEGKAKRQAKKSERKPDLPAISSNLHSS 75
            R  S  +P  D+ ++ +  Q+  E S L +   +   + + +  + KP L   SS  H+S
Sbjct: 883  RPSSSSIPEEDEEYTDSRVQETSEGSQLSE--FQSSRRGRGRPRKAKPALNPTSSVKHAS 940

Query: 76   VVHVQQKFGCGDYEPPAKLQCGGGGVTGEALTKFSVEIVQQLEFTTSAADSQPQQISTNV 135
            +    +    G     +K   GGGG   + +   +    ++ + T +     P Q   N+
Sbjct: 941  LEESSKDELSGHVSVTSKKTTGGGGRKRQHIDDTATGGKRRRQQTVAVLPQTPGQRHYNL 1000

Query: 136  TVKALANAV 144
              K   + V
Sbjct: 1001 RRKKTVDQV 1009


>At1g02000.1 68414.m00118 NAD-dependent epimerase/dehydratase family
           protein similar to nucleotide sugar epimerase from
           Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
           [Escherichia coli] GI:5739472, CAPI protein
           {Staphylococcus aureus} SP|P39858; contains Pfam profile
           PF01370 NAD dependent epimerase/dehydratase family
          Length = 434

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 7/56 (12%)

Query: 42  ALQKRFLEGKAKRQAKKSERKPDLPAISSNLHSSVVHVQQKFGCGDYEPPAKLQCG 97
           ++ +R L+ KAKR   K  R  D+P   +N+ S+    Q++FG   Y+P   LQ G
Sbjct: 363 SILERLLKVKAKRNMMKLPRNGDVPFTHANISSA----QREFG---YKPSTDLQTG 411


>At3g20430.1 68416.m02587 expressed protein 
          Length = 265

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 203 LADLIGEDDGDDTFEDLITEISEYPEFMKDFDLDAGK 239
           L D I E+DG +  ED+     E  E + D DLD+G+
Sbjct: 7   LLDAINEEDGFENLEDVEMVDVEEGEIVVDHDLDSGE 43


>At1g67870.1 68414.m07750 glycine-rich protein contains
           non-consensus GG donor splice site at exon2; modeled to
           est match.
          Length = 279

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 295 RPRHTPPPIDHLHMSQQQQLHVTQPHHNLQVDCELVSGRKNENGIRIHTYGTGHNVRLQE 354
           R +HT      LHM+ +    VTQPHHN ++  ++ +G +  + I    +  GH ++  +
Sbjct: 82  RTQHTTALPQPLHMNFRPPPPVTQPHHNGKMG-KIGNGLQQGHEIHGMKHQGGHGIQHHD 140

Query: 355 I 355
           I
Sbjct: 141 I 141


>At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 finger protein RHX1a
           [Arabidopsis thaliana] GI:3790591; contains Pfam profile
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 423

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 3   KIGGFQRRIETYRRRQSECVPRFDQSFSGACEQQ-NLETSALQKRFLEGKAKRQAKKSER 61
           K+ G + R+ ++R   SEC   FD +  G  +     E+ +L K +L GK ++Q   S R
Sbjct: 304 KLSG-KDRVPSHRTVMSEC--GFDPTVKGIEKSVVERESFSLSKIWLRGKKEKQKGTSAR 360

Query: 62  KPDLPAISSN 71
             D   +SS+
Sbjct: 361 DSDCSFVSSS 370


>At1g06950.1 68414.m00738 chloroplast inner envelope protein-related
           similar to chloroplast inner envelope protein GI:1495767
           from [Pisum sativum]
          Length = 1016

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 106 LTKFSVEIVQQLEFTTSAADSQPQQISTNVTVKALANAVKT 146
           LTK  VE + +L+        Q +++  N+T   +ANA++T
Sbjct: 793 LTKARVEQLDELQKQVGLPQPQAEKVIKNITTTKMANAIET 833


>At4g06603.1 68417.m01028 expressed protein
          Length = 786

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 26  DQSFSGACEQQNLETSALQKRFLEGKAKRQAKKSERKPDLPAISSNLHSSVVHVQQKFGC 85
           D  + G  E +++     QK F + + KR+ KK    P+ P  S     S+  ++ +FG 
Sbjct: 106 DFLYFGPNETEDILRLNEQKAFEKAEKKRKKKKKAVMPNPPGSSMCTEQSLSDLKARFGL 165

Query: 86  G 86
           G
Sbjct: 166 G 166


>At5g20750.1 68418.m02466 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 944

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 2/94 (2%)

Query: 144 VKTXXXXXXXXXXXRIPTPLDCERECKAECKSEVADDEFVGLDECAAALERDAASAF-PG 202
           VKT           + P P D  +  + E +S ++ D    + +          S F P 
Sbjct: 524 VKTSLSKKPSPFVSKKPPPSDSRKRQRVEVQS-LSPDTSKDIVQDGGFHAPSFDSPFNPN 582

Query: 203 LADLIGEDDGDDTFEDLITEISEYPEFMKDFDLD 236
           L    G DD   T ++   +  E P  MKD D+D
Sbjct: 583 LPATEGHDDAKSTSQNFCGDTQEPPLPMKDLDVD 616


>At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putative
           bHLH127 transcription factor
          Length = 880

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 288 RYRGYGYRPRHTP--PPIDHLHMSQQQQLHVTQPHHNLQVD 326
           R  G G R  +TP  PP+ H ++  Q+    + PHH L+ D
Sbjct: 713 RGSGSGGREENTPLPPPLPHQNLFIQEDEMSSWPHHPLRQD 753


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,584,492
Number of Sequences: 28952
Number of extensions: 358400
Number of successful extensions: 975
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 971
Number of HSP's gapped (non-prelim): 9
length of query: 364
length of database: 12,070,560
effective HSP length: 82
effective length of query: 282
effective length of database: 9,696,496
effective search space: 2734411872
effective search space used: 2734411872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)