GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000899-TA|BGIBMGA000899-PA|IPR009053|Prefoldin
         (724 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    28   0.20 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          28   0.26 
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    27   0.60 
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    23   9.7  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   9.7  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 28.3 bits (60), Expect = 0.20
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 384 QYLEQEIKELKYTLDLTNNQNSDLKQELNNLKNCKDELSTEKFNFIE-EIKTLKDELIEK 442
           +++   I +L    +  N     L+Q    LK  +  ++ EK NFI+ E+K L   L   
Sbjct: 452 EFVVNYIDDLLVASETLNEHLEHLRQVFEKLKQARMTINLEKSNFIQKEVKFLGHILTIN 511

Query: 443 TINYENEK 450
            I  + EK
Sbjct: 512 GIKADPEK 519



 Score = 25.4 bits (53), Expect = 1.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 233 SLCKDLQEKLTSNELTLAETQQRLEMVKG 261
           S C+ L E+LT   L L +    +E+VKG
Sbjct: 681 SRCRLLSERLTRWTLILGQYDYEIELVKG 709


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 0.26
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 664 LRQENEELTMTVAKQSSIIDKLKKDLE 690
           LRQE E L   V ++S ++D LK  +E
Sbjct: 349 LRQEQETLKSQVQRESDVVDSLKDVIE 375


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 26.6 bits (56), Expect = 0.60
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 657 LVVELSLLRQENEELTMTVAKQSSIIDKLKKDLEQSQYTPKSPSVLRKSLKVGKENMQTI 716
           L++ L  L Q    +  TV +  + +D+  K  EQ     ++   L K + + K N++T 
Sbjct: 676 LLLTLGSLLQMVISMDSTVEEAKTFVDRCYKMQEQFTLNFRNSDELIKFISIAKHNVRTF 735

Query: 717 S 717
           S
Sbjct: 736 S 736


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 289 DEEKQAIISKCKVDQENLKTKHNASIESLKNQMLKEKCEALEQLHSQ 335
           +E K+ I    K +      KH   I  + + ++K+K E  EQL  +
Sbjct: 56  EELKKDIPDALKNECAKCNDKHKEGIRKVIHYLVKQKPEWWEQLQKK 102


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 8/25 (32%), Positives = 17/25 (68%)

Query: 129 DYKNEIAQLQEILKELATKFRQSHN 153
           DY+ ++AQ+++I  +   K+ Q+ N
Sbjct: 146 DYRAKLAQIRQIYHQELEKYEQACN 170


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.308    0.125    0.320 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,548
Number of Sequences: 317
Number of extensions: 5196
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 6
length of query: 724
length of database: 114,650
effective HSP length: 62
effective length of query: 662
effective length of database: 94,996
effective search space: 62887352
effective search space used: 62887352
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 46 (22.6 bits)