Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000898-TA|BGIBMGA000898-PA|undefined
         (173 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce...    83   3e-17
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   3.5  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   3.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   4.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   4.7  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   8.1  

>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 217

 Score = 82.6 bits (195), Expect = 3e-17
 Identities = 37/51 (72%), Positives = 43/51 (84%)

Query: 1  MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHL 51
          MD+QNR G + GGGGVA + E+N  RRERLR+LALETIDL+KDPY MKNHL
Sbjct: 1  MDYQNRAGVRFGGGGVAGYQETNAARRERLRKLALETIDLSKDPYLMKNHL 51



 Score = 76.6 bits (180), Expect = 2e-15
 Identities = 35/84 (41%), Positives = 55/84 (65%), Gaps = 7/84 (8%)

Query: 46  FMKNHLEIAEGVIPRHRFMSAYEQKIEPPDRRWQYLLFAAEPYETIAFKVPSREVEKHDS 105
           F   + +I     PR+R MSAYEQ++E PDR++QYL+ AAEPYE+IAFK     +++   
Sbjct: 140 FQIKYPDIEVNAKPRYRIMSAYEQRVEAPDRKFQYLVVAAEPYESIAFK-----IDRAPG 194

Query: 106 KFWTHWNKDTKQFFLQFAFKMDQL 129
           KFW++W  D   + +QF + + ++
Sbjct: 195 KFWSYW--DAPTYTIQFFYNLTKI 216


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 5   NRPGGKTGGGGVASWSESNRDRRERLRQLA 34
           NR G   GGG    + +SNR  R R +Q A
Sbjct: 455 NRGGHPRGGGNRGGYRQSNRQPRYRGQQKA 484


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 20  SESNRDRRERLRQLALETIDLNKDPYFMKN-HLEIAEGVIPR 60
           + SN+D R R+     + IDLN  P  +KN  +E + G + R
Sbjct: 438 ASSNQDYRVRVLSRNFKCIDLNNVPEIIKNAKVESSFGTVYR 479


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 104  DSKFWTHWNKDTKQFFLQFAFKMDQLRM 131
            D  F+ HW ++ K    Q A   +QL M
Sbjct: 2598 DDMFYGHWRRNCKYLQTQVALSYEQLGM 2625


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 65  SAYEQKIEPPDRRWQYLLFAAEPYETIAFKVPSR 98
           SA    I PP R W    F ++ +E I  K+PSR
Sbjct: 678 SAANSPITPP-RTWHSPDFTSKSFEPIERKLPSR 710


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 59  PRHRFMSAYEQKIEPPDRRWQYLLFAAEPYETIAFKVPSREVEKHDSKFWT---HWNKDT 115
           P   F+SA +QK+E  D+ +   L AA      AF    + V K++ +F +    + KD 
Sbjct: 225 PYIEFLSALDQKLESADKAFIKSLDAANGR---AFNALKQRVRKNNRQFQSDIDRYRKDP 281

Query: 116 KQF 118
           + F
Sbjct: 282 EGF 284


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 779,116
Number of Sequences: 5004
Number of extensions: 31640
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 7
length of query: 173
length of database: 2,362,478
effective HSP length: 68
effective length of query: 105
effective length of database: 2,022,206
effective search space: 212331630
effective search space used: 212331630
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)