Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000898-TA|BGIBMGA000898-PA|undefined
(173 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 103 1e-22
03_03_0063 - 14176137-14176769,14178220-14178513,14178966-14179058 31 0.67
04_01_0030 - 376883-377524 30 0.88
02_04_0060 - 19345316-19345453,19345718-19345849,19345937-193460... 30 0.88
07_03_0972 + 23043034-23043203,23045120-23045600,23045621-230457... 29 1.5
07_01_0976 + 8226194-8226473,8227116-8227291,8227366-8227486,822... 29 2.0
09_02_0113 + 4408171-4409415,4409902-4409907 28 3.6
04_03_0816 + 19992641-19993197,19994933-19995023,19997761-19998051 28 3.6
06_02_0024 - 10714741-10716241,10716774-10717840 28 4.7
04_03_0833 + 20147242-20147849,20147937-20148081,20148157-201482... 28 4.7
12_02_0916 - 24271151-24271894 27 6.2
12_02_0615 + 21242819-21243201,21244510-21244630,21244728-212448... 27 6.2
08_01_0631 - 5473382-5474135,5474767-5475119,5475481-5475543 27 6.2
07_03_1287 + 25510813-25510862,25511326-25511504,25511715-255120... 27 8.2
07_03_0482 + 18589573-18589728,18589889-18590065,18590518-185906... 27 8.2
01_06_0345 - 28588204-28588479 27 8.2
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 103 bits (246), Expect = 1e-22
Identities = 47/87 (54%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Query: 52 EIAEGVIPRHRFMSAYEQKIEPPDRRWQYLLFAAEPYETIAFKVPSREVEKHDSKFWTHW 111
EI E PRHRFM++YEQK+E D+++QYLLFAAEPYE I FK+PS E++K KF+ +W
Sbjct: 168 EIEENSKPRHRFMASYEQKVESWDKKYQYLLFAAEPYEIIGFKIPSAEIDKSADKFFNYW 227
Query: 112 NKDTKQFFLQFAFKMDQ--LRMPPPHP 136
+ D KQ+ LQ FK Q PP P
Sbjct: 228 DPDKKQYILQLYFKTRQPEANKPPAAP 254
Score = 66.1 bits (154), Expect = 1e-11
Identities = 31/44 (70%), Positives = 33/44 (75%)
Query: 8 GGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHL 51
G K G GG AS DRRERLR+LALETIDL KDPYFM+NHL
Sbjct: 6 GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHL 49
>03_03_0063 - 14176137-14176769,14178220-14178513,14178966-14179058
Length = 339
Score = 30.7 bits (66), Expect = 0.67
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 2 DFQNRPGGKTGGGG--VASWSESNRDRRER----LRQLALETIDLNKDPYFMKNHLE 52
++ + P GGGG +A+ SE NR R R L +LA N YF++NH+E
Sbjct: 209 EYCSSPADYAGGGGDLLAALSEDNRQLRRRNSLLLSELAHMRKLYNDIIYFLQNHVE 265
>04_01_0030 - 376883-377524
Length = 213
Score = 30.3 bits (65), Expect = 0.88
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 6 RPGGKTGGGGVASWSESNRDRRERLRQLALE 36
R GG GG V +++ RD ERLRQ A E
Sbjct: 106 RSGGGGRGGAVGDCADTLRDAEERLRQSAAE 136
>02_04_0060 -
19345316-19345453,19345718-19345849,19345937-19346005,
19346453-19346551,19346702-19346786,19346890-19346990,
19347294-19347362,19347635-19347675,19348343-19348458,
19348546-19348702,19349266-19349474,19349811-19349914,
19350234-19350381,19350463-19350761,19350844-19351377
Length = 766
Score = 30.3 bits (65), Expect = 0.88
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 2 DFQNRPGGKTGGGGVASWSESNRDRRERLRQLAL---ETIDLNKDPYFMKNHLEIAE 55
D +RP G +GGGG SW++ + + LAL DP F+ + + A+
Sbjct: 105 DPADRPAGSSGGGGSKSWAQQAEEAYQLQLALALRLCSEASTAPDPNFLDSAVAAAD 161
>07_03_0972 +
23043034-23043203,23045120-23045600,23045621-23045734,
23045807-23046592
Length = 516
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 11 TGGGGVASWSESNRDRRERLRQLAL-ETIDLNKDPY 45
TGG G+A+WSE RDR R + L T+ L+ PY
Sbjct: 431 TGGDGLAAWSE--RDRAIRGEDIVLWYTVGLHHVPY 464
>07_01_0976 +
8226194-8226473,8227116-8227291,8227366-8227486,
8228684-8228757,8229269-8229332,8229969-8230039,
8230279-8230368,8230491-8230661,8231668-8231739
Length = 372
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 30 LRQLALETIDLNKDPYFMK-NHLEIAEGVIPRHRFMSAYEQKIEPPD 75
LRQ+ L T ++ PY + L + V PR F++A +Q E PD
Sbjct: 150 LRQIVLLTDGMDTRPYRLSWPRLSVVYDVSPRRVFITASQQLRESPD 196
>09_02_0113 + 4408171-4409415,4409902-4409907
Length = 416
Score = 28.3 bits (60), Expect = 3.6
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 18 SWSESNRDRRERLRQLALET-IDLNKDPYFMKNHLEIAEGVIPRHRFMSAYEQKIEPPDR 76
+W S RD R L +T + + DPY+ + A G I H S K++P
Sbjct: 209 AWVASYRDGECSWRALPRDTGVTVAFDPYWFEGRCVHAAGDIYWHICHSGRLLKLDPATL 268
Query: 77 RWQYLLFAAE 86
+ YLL +E
Sbjct: 269 SFSYLLAPSE 278
>04_03_0816 + 19992641-19993197,19994933-19995023,19997761-19998051
Length = 312
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 5 NRPGGKT--GGGGVASWSESNRDRRERLRQLAL 35
N P G GGG A W R RR+R++++ L
Sbjct: 104 NEPAGTALAGGGASAGWLVGRRRRRQRVQEVRL 136
>06_02_0024 - 10714741-10716241,10716774-10717840
Length = 855
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 16 VASWSESNRDRRERLRQLALETIDLNKDPYFMKNH-LEIAEGVIPRHRFMSA---YEQKI 71
+A S ++RR LRQ A E N D + N LE A ++ ++A Y+ +
Sbjct: 328 LAGMYSSVKERRYHLRQPARELAQANDDREKLLNQALEKARSLVLLLATLAATITYQAVL 387
Query: 72 EPPDRRWQ 79
+PP WQ
Sbjct: 388 DPPGGYWQ 395
>04_03_0833 +
20147242-20147849,20147937-20148081,20148157-20148210,
20148297-20148388,20148957-20149093,20149210-20149464,
20149598-20149771,20149863-20149960
Length = 520
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 4 QNRPGGKTGGGGVASWSESNRDRRERLRQLALETI 38
+ R GG GGGGVA+ S R RE A+ ++
Sbjct: 55 KGRGGGGGGGGGVAAGSSEYRKDREEWTDGAISSL 89
>12_02_0916 - 24271151-24271894
Length = 247
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 8 GGKTGGGGVASWSESNRDRRER 29
GG GGG V W + R RR R
Sbjct: 29 GGGGGGGQVEGWGKRKRSRRRR 50
>12_02_0615 +
21242819-21243201,21244510-21244630,21244728-21244847,
21245015-21245245,21245365-21245862
Length = 450
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 8 GGKTGGGGVASWSESNRDRRERLRQ 32
GG GGGGV S + RER RQ
Sbjct: 14 GGGGGGGGVGKKRGSGEEERERERQ 38
>08_01_0631 - 5473382-5474135,5474767-5475119,5475481-5475543
Length = 389
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 111 WNKDTKQ-FFLQFAFKMDQLRMPPPHPKMW 139
WN FF+ A ++D +R+P P + W
Sbjct: 15 WNSHLSMVFFVPLAMEVDSIRLPAPDERDW 44
>07_03_1287 +
25510813-25510862,25511326-25511504,25511715-25512037,
25512160-25513950
Length = 780
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 14 GGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLEIAEGV 57
GG+ W ER + + LE + K+ K LE AE V
Sbjct: 170 GGIVDWKAHKAQMMERRKFIQLELEKVQKEIPLYKEELEAAEMV 213
>07_03_0482 +
18589573-18589728,18589889-18590065,18590518-18590688,
18590913-18591029,18591614-18591742,18592210-18592311,
18592412-18592498,18592585-18592638,18594880-18595016,
18595181-18595235,18596133-18596188,18596275-18596334,
18596442-18596529,18596634-18597371,18597451-18597511,
18598301-18598403,18599180-18599311,18599393-18599477
Length = 835
Score = 27.1 bits (57), Expect = 8.2
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 3 FQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLEIAEGVI 58
F R GG GGGG A E D L L L+ L P ++ + A+G +
Sbjct: 6 FVVRQGGGGGGGGEAEEHEVEYDTEHGLDILRLQIFSLTSVPPELQKIVVEADGSV 61
>01_06_0345 - 28588204-28588479
Length = 91
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 6 RPGGKTGGGGVASWSESNRDRRERLRQLALE 36
R G TGGGG A R +ERLR+ E
Sbjct: 16 RGGAGTGGGGGAQGGGDLRKAKERLREAIRE 46
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.136 0.439
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,457,272
Number of Sequences: 37544
Number of extensions: 221880
Number of successful extensions: 815
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 17
length of query: 173
length of database: 14,793,348
effective HSP length: 77
effective length of query: 96
effective length of database: 11,902,460
effective search space: 1142636160
effective search space used: 1142636160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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