GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000898-TA|BGIBMGA000898-PA|undefined
         (173 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118970-1|AAM50830.1|  264|Drosophila melanogaster LD47455p pro...   164   7e-41
AE014296-2197|AAF49876.1|  264|Drosophila melanogaster CG10754-P...   164   7e-41
AE014134-1683|AAN10707.1|  888|Drosophila melanogaster CG18660-P...    29   4.5  

>AY118970-1|AAM50830.1|  264|Drosophila melanogaster LD47455p
           protein.
          Length = 264

 Score =  164 bits (398), Expect = 7e-41
 Identities = 69/93 (74%), Positives = 79/93 (84%)

Query: 46  FMKNHLEIAEGVIPRHRFMSAYEQKIEPPDRRWQYLLFAAEPYETIAFKVPSREVEKHDS 105
           F  ++ EI E ++PRHRFMSAYEQKIEPPDR+WQYLLFAAEPYETI FKVPSREVEK + 
Sbjct: 135 FQVDYPEITESIVPRHRFMSAYEQKIEPPDRKWQYLLFAAEPYETIGFKVPSREVEKSEG 194

Query: 106 KFWTHWNKDTKQFFLQFAFKMDQLRMPPPHPKM 138
           KFWTHWN+DTKQFFLQFAFK +   +PPP P +
Sbjct: 195 KFWTHWNRDTKQFFLQFAFKFEPKILPPPPPNL 227



 Score =  106 bits (254), Expect = 2e-23
 Identities = 47/51 (92%), Positives = 49/51 (96%)

Query: 1  MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHL 51
          MDFQNR GGKTG GGVASWSE+NRDR+ERLRQLALETIDLNKDPYFMKNHL
Sbjct: 1  MDFQNRAGGKTGSGGVASWSETNRDRKERLRQLALETIDLNKDPYFMKNHL 51


>AE014296-2197|AAF49876.1|  264|Drosophila melanogaster CG10754-PA
           protein.
          Length = 264

 Score =  164 bits (398), Expect = 7e-41
 Identities = 69/93 (74%), Positives = 79/93 (84%)

Query: 46  FMKNHLEIAEGVIPRHRFMSAYEQKIEPPDRRWQYLLFAAEPYETIAFKVPSREVEKHDS 105
           F  ++ EI E ++PRHRFMSAYEQKIEPPDR+WQYLLFAAEPYETI FKVPSREVEK + 
Sbjct: 135 FQVDYPEITESIVPRHRFMSAYEQKIEPPDRKWQYLLFAAEPYETIGFKVPSREVEKSEG 194

Query: 106 KFWTHWNKDTKQFFLQFAFKMDQLRMPPPHPKM 138
           KFWTHWN+DTKQFFLQFAFK +   +PPP P +
Sbjct: 195 KFWTHWNRDTKQFFLQFAFKFEPKILPPPPPNL 227



 Score =  106 bits (254), Expect = 2e-23
 Identities = 47/51 (92%), Positives = 49/51 (96%)

Query: 1  MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHL 51
          MDFQNR GGKTG GGVASWSE+NRDR+ERLRQLALETIDLNKDPYFMKNHL
Sbjct: 1  MDFQNRAGGKTGSGGVASWSETNRDRKERLRQLALETIDLNKDPYFMKNHL 51


>AE014134-1683|AAN10707.1|  888|Drosophila melanogaster CG18660-PC,
           isoform C protein.
          Length = 888

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 8   GGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMK 48
           G  +GGGG +  +++    R  L QL + TID   D  F++
Sbjct: 550 GNSSGGGGTSGSTQTGAKFRHGLLQLMIHTIDPLHDGKFVE 590


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.136    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,813,188
Number of Sequences: 52641
Number of extensions: 366640
Number of successful extensions: 1182
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 5
length of query: 173
length of database: 24,830,863
effective HSP length: 80
effective length of query: 93
effective length of database: 20,619,583
effective search space: 1917621219
effective search space used: 1917621219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)