GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000898-TA|BGIBMGA000898-PA|undefined
         (173 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68297-1|CAA92593.2|  222|Caenorhabditis elegans Hypothetical pr...   145   1e-35
Z68213-3|CAA92438.1|  223|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U52000-2|AAK68677.1|  529|Caenorhabditis elegans Vang (van gogh/...    28   4.1  
U52000-1|AAA96091.1|  532|Caenorhabditis elegans Vang (van gogh/...    28   4.1  
Z93393-5|CAB07690.1|  611|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z83234-7|CAB76745.1|  667|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z82067-4|CAB76738.1|  667|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL032630-5|CAA21569.2|  165|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z68297-1|CAA92593.2|  222|Caenorhabditis elegans Hypothetical
           protein F11A10.2 protein.
          Length = 222

 Score =  145 bits (352), Expect = 1e-35
 Identities = 64/88 (72%), Positives = 76/88 (86%), Gaps = 1/88 (1%)

Query: 46  FMKNHLEIAEGVIPRHRFMSAYEQKIEPPDRRWQYLLFAAEPYETIAFKVPSREVEKHDS 105
           F  ++ EIA+G+ PRHRFMSAYEQKI+PPD+RWQYLLFAAEPYETI FK+PSREV+K + 
Sbjct: 134 FQIDYPEIADGIAPRHRFMSAYEQKIQPPDKRWQYLLFAAEPYETIGFKIPSREVDKSE- 192

Query: 106 KFWTHWNKDTKQFFLQFAFKMDQLRMPP 133
           KFWT WNKDTKQFFLQ AFK+++L   P
Sbjct: 193 KFWTMWNKDTKQFFLQVAFKLERLDDQP 220



 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 40/51 (78%), Positives = 45/51 (88%)

Query: 1  MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHL 51
          MDFQNR GGKTG GGVAS +++  DRRERLRQLALETIDL KDPYFM+NH+
Sbjct: 1  MDFQNRAGGKTGSGGVASAADAGVDRRERLRQLALETIDLQKDPYFMRNHI 51


>Z68213-3|CAA92438.1|  223|Caenorhabditis elegans Hypothetical
           protein C01F6.5 protein.
          Length = 223

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 4   QNRPGGK-TGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMK 48
           QN   GK TGG G     ++ + +RE   +  LE +D   D Y  K
Sbjct: 177 QNVKSGKPTGGAGAQKKLKAKKPKREAQPKKTLEELDAELDVYMSK 222


>U52000-2|AAK68677.1|  529|Caenorhabditis elegans Vang (van
          gogh/strabismus planarpolarity protein) homolog protein
          1, isoform b protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 52 EIAEGVIPRHRFMSAYEQKIEPPDRRW 78
          EI E  IPR   +++  QKI PP+  W
Sbjct: 37 EIGEPFIPRFSAIASEGQKIAPPNEDW 63


>U52000-1|AAA96091.1|  532|Caenorhabditis elegans Vang (van
          gogh/strabismus planarpolarity protein) homolog protein
          1, isoform a protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 52 EIAEGVIPRHRFMSAYEQKIEPPDRRW 78
          EI E  IPR   +++  QKI PP+  W
Sbjct: 37 EIGEPFIPRFSAIASEGQKIAPPNEDW 63


>Z93393-5|CAB07690.1|  611|Caenorhabditis elegans Hypothetical
           protein Y48E1B.4 protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 3   FQNRPGGKTGGGGVASWSESNRDRRERLRQLALE 36
           F+N  GG+ GGG +  W+ + R +R+ L   ++E
Sbjct: 112 FENS-GGENGGGILKIWTVNERSKRKMLECFSVE 144


>Z83234-7|CAB76745.1|  667|Caenorhabditis elegans Hypothetical
           protein W03H9.4 protein.
          Length = 667

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 84  AAEPYETIAFKVPSREVEK-HDSKFWTHWNKDTKQFFLQF 122
           A  PYE IAFKV +RE E  H + +   +     Q +  F
Sbjct: 621 AGPPYEDIAFKVVNREWETLHKNGYKCQFQNGVFQLWFMF 660


>Z82067-4|CAB76738.1|  667|Caenorhabditis elegans Hypothetical
           protein W03H9.4 protein.
          Length = 667

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 84  AAEPYETIAFKVPSREVEK-HDSKFWTHWNKDTKQFFLQF 122
           A  PYE IAFKV +RE E  H + +   +     Q +  F
Sbjct: 621 AGPPYEDIAFKVVNREWETLHKNGYKCQFQNGVFQLWFMF 660


>Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical protein
            F21G4.6 protein.
          Length = 1885

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 92   AFKVPSREVEKHDSKFWTH-WNKDTKQFFLQFAFKMDQL 129
            AF  P   +E+HD K WTH  +     +FL  A  +D +
Sbjct: 1463 AFTTP---LERHDQKSWTHRIDHSASNYFLTSATNIDTI 1498


>AL032630-5|CAA21569.2|  165|Caenorhabditis elegans Hypothetical
          protein Y62H9A.5 protein.
          Length = 165

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 7  PGGKTGGGGVASWSESNRDRRERLRQLALETIDLNK 42
          PG   GGGG   +S+ + D RE  R    +  DL+K
Sbjct: 30 PGPSYGGGGYPIYSDEDSDSREHRRDFR-KLKDLHK 64


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
          protein H11E01.3 protein.
          Length = 1464

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 4  QNRPGGKTGGGGVASWSES--NRDRRERLRQLALETIDLN-KDPY 45
          +NR G   GGG    +S S  +RD  +R+     + ++ N KDPY
Sbjct: 54 RNRAGQSGGGGRQRRYSNSFEDRDFVQRIEDRNTDPVEQNTKDPY 98


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.136    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,322,945
Number of Sequences: 27539
Number of extensions: 179319
Number of successful extensions: 415
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 12
length of query: 173
length of database: 12,573,161
effective HSP length: 77
effective length of query: 96
effective length of database: 10,452,658
effective search space: 1003455168
effective search space used: 1003455168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)