GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000898-TA|BGIBMGA000898-PA|undefined
         (173 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   2.9  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   3.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   3.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   3.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   3.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   5.0  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    21   8.7  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    21   8.7  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    21   8.7  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    21   8.7  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    21   8.7  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    21   8.7  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    21   8.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 13  GGGVASWSESNRDRRERLRQLALETIDLNKD 43
           G GV +W  + RD   RL  L  + + ++KD
Sbjct: 479 GNGVYAWIGAGRDSDSRLLDLCTKFL-MHKD 508


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
          determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 18 SWSESNRDRRERLR 31
          +W E +RDR ER R
Sbjct: 62 TWKERSRDRTERER 75


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
          determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 18 SWSESNRDRRERLR 31
          +W E +RDR ER R
Sbjct: 62 TWKERSRDRTERER 75


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
          determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 18 SWSESNRDRRERLR 31
          +W E +RDR ER R
Sbjct: 62 TWKERSRDRTERER 75


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
          determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 18 SWSESNRDRRERLR 31
          +W E +RDR ER R
Sbjct: 62 TWKERSRDRTERER 75


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 96  PSREVEKHDSKFWTH 110
           P R   KHD + W H
Sbjct: 174 PQRTDGKHDYRVWNH 188


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
          determiner protein.
          Length = 182

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 21 ESNRDRRERLRQLALETIDLNKDPYFMKNH 50
          E +RDRRER R    + I    + Y   N+
Sbjct: 65 ERSRDRRERERSKEPKIISSLSNNYNYSNY 94


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
          determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 21 ESNRDRRERLRQLALETIDLNKDPYFMKNH 50
          E +RDRRER R    + I    + Y   N+
Sbjct: 65 ERSRDRRERERSKEPKIISSLSNNYNYSNY 94


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
          determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 21 ESNRDRRERLRQLALETIDLNKDPYFMKNH 50
          E +RDRRER R    + I    + Y   N+
Sbjct: 65 ERSRDRRERERSKEPKIISSLSNNYNYSNY 94


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
          determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 21 ESNRDRRERLRQLALETIDLNKDPYFMKNH 50
          E +RDRRER R    + I    + Y   N+
Sbjct: 65 ERSRDRRERERSKEPKIISSLSNNYNYSNY 94


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
          determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 21 ESNRDRRERLRQLALETIDLNKDPYFMKNH 50
          E +RDRRER R    + I    + Y   N+
Sbjct: 65 ERSRDRRERERSKEPKIISSLSNNYNYSNY 94


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
          determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 21 ESNRDRRERLRQLALETIDLNKDPYFMKNH 50
          E +RDRRER R    + I    + Y   N+
Sbjct: 65 ERSRDRRERERSKEPKIISSLSNNYNYSNY 94


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
          determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 21 ESNRDRRERLRQLALETIDLNKDPYFMKNH 50
          E +RDRRER R    + I    + Y   N+
Sbjct: 65 ERSRDRRERERSKEPKIISSLSNNYNYSNY 94


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,106
Number of Sequences: 429
Number of extensions: 2154
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 173
length of database: 140,377
effective HSP length: 54
effective length of query: 119
effective length of database: 117,211
effective search space: 13948109
effective search space used: 13948109
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)