GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000898-TA|BGIBMGA000898-PA|undefined
         (173 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family...   109   1e-24
At5g51140.1 68418.m06341 pseudouridine synthase family protein l...    32   0.18 
At5g38610.1 68418.m04670 invertase/pectin methylesterase inhibit...    28   3.0  
At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein ...    28   3.9  
At4g37980.1 68417.m05367 mannitol dehydrogenase, putative (ELI3-...    27   6.9  
At1g79570.1 68414.m09276 protein kinase family protein low simil...    27   6.9  
At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative ...    27   6.9  
At5g34900.1 68418.m04114 Ulp1 protease family protein contains P...    27   9.1  

>At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family
           protein similar to SWISS-PROT:Q15428
          Length = 277

 Score =  109 bits (261), Expect = 1e-24
 Identities = 48/80 (60%), Positives = 61/80 (76%)

Query: 46  FMKNHLEIAEGVIPRHRFMSAYEQKIEPPDRRWQYLLFAAEPYETIAFKVPSREVEKHDS 105
           F   + EI + + PRHRFMS+YEQK++P D+ +QYLLFAAEPYE IAFKVPS EV+K   
Sbjct: 132 FQIEYPEIEDNIKPRHRFMSSYEQKVQPYDKSYQYLLFAAEPYEIIAFKVPSTEVDKSTP 191

Query: 106 KFWTHWNKDTKQFFLQFAFK 125
           KF++HW+ D+K F LQ  FK
Sbjct: 192 KFFSHWDPDSKMFTLQVYFK 211



 Score = 66.5 bits (155), Expect = 9e-12
 Identities = 31/44 (70%), Positives = 33/44 (75%)

Query: 8  GGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHL 51
          G K G GG AS      DRRERLR+LALETIDL KDPYFM+NHL
Sbjct: 6  GSKPGSGGAASGQNEAIDRRERLRRLALETIDLAKDPYFMRNHL 49


>At5g51140.1 68418.m06341 pseudouridine synthase family protein low
           similarity to SP|P23851 Ribosomal large subunit
           pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
           synthase) (Uracil hydrolyase) {Escherichia coli};
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 395

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 43  DPYFMKNHLEIAEGVIPRHRFMSAYEQKI-EPPDRRWQYLLFAAEPYETIAFKVPSREVE 101
           DP ++  H++  E  I +   + A E+KI  P D  +    F+ +P  T   K+  +  E
Sbjct: 308 DPLYLNQHIDNLETYIAKR--IDAGERKIVSPDDYVYSSEDFSIDPMCTNCPKLIPQGYE 365

Query: 102 KHDSKFWTH 110
           +HD   W H
Sbjct: 366 EHDEALWLH 374


>At5g38610.1 68418.m04670 invertase/pectin methylesterase inhibitor
           family protein low similarity to pistil-specific gene
           sts15 [Solanum tuberosum] GI:1616628; contains Pfam
           profile PF04043: Plant invertase/pectin methylesterase
           inhibitor
          Length = 199

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 3   FQNRPGGKTGGGGVASWSESNRDRRERL 30
           F+ R  G  GGGGV +W+    D   +L
Sbjct: 149 FRERDDGDGGGGGVTTWTSPIGDENHKL 176


>At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 252

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 122 FAFKMDQLRMPPPHPKMWE 140
           FA   ++LR+PPP P  W+
Sbjct: 94  FAHSAEELRLPPPPPPNWQ 112


>At4g37980.1 68417.m05367 mannitol dehydrogenase, putative (ELI3-1)
           identical to GI:16267
          Length = 357

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 10  KTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLEIAEGVI 58
           K  G  V   S S R R E + +L  +   +++DP  MK+ +   +G+I
Sbjct: 200 KAMGTKVTVISTSERKRDEAVTRLGADAFLVSRDPKQMKDAMGTMDGII 248


>At1g79570.1 68414.m09276 protein kinase family protein low
           similarity to EDR1 [Arabidopsis thaliana] GI:11127925
          Length = 1248

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 97  SREVEKHDSKFWTHWNKDTKQFFLQFAFKMDQLRMPPPHPKMWEGHSMR 145
           S  V+ HD K W+++ +  +  F+Q    +DQ     P  +   G S R
Sbjct: 811 SMNVQNHDRKNWSYFQQLAEDQFIQRDVVLDQADSRIPSDRKDGGESSR 859


>At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative
          similar to GTL1 [Arabidopsis thaliana] GI:2664198
          Length = 669

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 17/39 (43%), Positives = 20/39 (51%)

Query: 8  GGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYF 46
          GG  GGGG  S S S+ +R  R   LAL  I  + D  F
Sbjct: 44 GGGGGGGGGGSASSSSGNRWPREETLALLRIRSDMDSTF 82


>At5g34900.1 68418.m04114 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At1g32840, At4g04010,
           At2g06430, At2g15140, At2g04980, At2g14130, At3g44500,
           At2g15190, At3g47260, At3g29210, At2g02210, At3g32900
          Length = 767

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 68  EQKIEPPDRRW--QYLLFAAEPYETIAFKVPSREVEKHDSKFWTHWNKDTKQFFL 120
           ++KI  P  R    + ++ A+P+   AF V S  + + D K W     D + F L
Sbjct: 189 KEKIPLPRLRHASDFEMYTAQPWGKEAFSVLSNSILRMDEKTWAKEKYDLRGFGL 243


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.136    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,162,564
Number of Sequences: 28952
Number of extensions: 167890
Number of successful extensions: 416
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 9
length of query: 173
length of database: 12,070,560
effective HSP length: 76
effective length of query: 97
effective length of database: 9,870,208
effective search space: 957410176
effective search space used: 957410176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)