Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000897-TA|BGIBMGA000897-PA|IPR001509|NAD-dependent
epimerase/dehydratase
         (399 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    25   0.95 
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    24   1.7  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    24   1.7  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   6.7  

>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 25.0 bits (52), Expect = 0.95
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 253 SDVAQGIVNAARDDDTKCEVYQAVGPK---RYLLADLVDWFYKLMRKDEKWGGY 303
           +++ + + +A   + +KC   Q  G K   R+L+    DW+ +L  K +K G Y
Sbjct: 61  AELKRHLPDALHTECSKCSETQKNGSKKIMRHLIDHKRDWWNELEEKYDKEGEY 114


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 254 DVAQGIVNAARDDDTKCEVYQAVGPK---RYLLADLVDWFYKLMRKDEKWGGY 303
           ++   + +A +   +KC   Q  G +   RYL+ +  DW+ +L  K +  G Y
Sbjct: 60  ELKNNLADALQTSCSKCSQRQKDGSRTIIRYLIKNKRDWWNELEAKYDPTGIY 112


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 254 DVAQGIVNAARDDDTKCEVYQAVGPK---RYLLADLVDWFYKLMRKDEKWGGY 303
           ++   + +A +   +KC   Q  G +   RYL+ +  DW+ +L  K +  G Y
Sbjct: 60  ELKNNLADALQTSCSKCSQRQQDGSRTIIRYLIKNKRDWWNELEAKYDPTGIY 112


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 291 YKLMRKDEKWGGYIRYDMKYDPILPLKVALVNAISPAYPLGNLHWEGIEREATSDN-VVI 349
           Y L    ++ GG  R  + Y   L +   +     P  P+      G     T D+    
Sbjct: 147 YHLQDIIDRNGG--RAPLTYHQFLAIIACMGPPPQPEPPVTFNSLNGAHTPLTDDHDEKY 204

Query: 350 GVPTLEDLG 358
           GVPTLE+LG
Sbjct: 205 GVPTLEELG 213


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.138    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,844
Number of Sequences: 317
Number of extensions: 4413
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 399
length of database: 114,650
effective HSP length: 58
effective length of query: 341
effective length of database: 96,264
effective search space: 32826024
effective search space used: 32826024
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)