Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000897-TA|BGIBMGA000897-PA|IPR001509|NAD-dependent
epimerase/dehydratase
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom...    33   0.071
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    28   2.0  
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    27   3.5  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    27   3.5  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    27   3.5  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    27   4.7  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   4.7  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    27   6.2  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   8.1  

>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 397

 Score = 33.1 bits (72), Expect = 0.071
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 39  LAAYKRGTGGRSS-----FNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYR 86
           +AA+K  T GR++      NG+V  V G +  +G+ V  KL  +G Q+++  R
Sbjct: 55  IAAFKFWTSGRTTTWERKMNGMVVMVTGGSSGIGQVVVEKLASLGAQVVILLR 107


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 113 DEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLSYLN 172
           D+  I  +   S VV + +           +DV VDG RR +R  R      +   SY  
Sbjct: 64  DDSEIVTSTANSTVVSSALSTPKIDDAQNSDDVRVDGTRRSSRAKRPV----YRDFSYTE 119

Query: 173 AEEHPKPLVLKKPS 186
            +EH  P+  K+ S
Sbjct: 120 IDEHEIPIPKKRKS 133


>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 14/113 (12%)

Query: 123 YSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLS----------YLN 172
           +  VVI+     +      Y +V+VDG   I + C++  V+  ++ S           +N
Sbjct: 70  HPRVVIHTASPVHNLARDIYFEVNVDGTANIIKACQKFNVDALVYTSSAGVVFNGADLIN 129

Query: 173 AEEHPKPLVLKKPSAWKISKYLGECAVRE---EYPTATIIRASDIYGSEDRFL 222
            +E  +P+      A+  SK L E  V E   E      +R + ++G  DR L
Sbjct: 130 VDE-SQPIPEVHMDAYNESKALAEKQVLEASSESLKTAALRVAGLFGPGDRQL 181


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 28/127 (22%), Positives = 48/127 (37%)

Query: 159 EEGVERFIHLSYLNAEEHPKPLVLKKPSAWKISKYLGECAVREEYPTATIIRASDIYGSE 218
           +E  E F   S   + +  KP     P   + S+ + E    EE   A    A      +
Sbjct: 208 QEKKEEFAPSSSTPSADSAKPETTNPPPQPQASEPMEEDKTAEELEEAATKEALKKKADQ 267

Query: 219 DRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAARDDDTKCEVYQAVGP 278
           ++ + +   K R+    +  YK    T K   +++++A     A + DD       A+  
Sbjct: 268 EKQIGNENYKKRNFPVAIEQYKKAWDTYKDITYLNNLAAAYFEADQLDDCIKTCEDAIEQ 327

Query: 279 KRYLLAD 285
            R L AD
Sbjct: 328 GRELRAD 334


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 9   QATSKLLHLNGSMSVVYIK--AANYS--SDRKP-NLAAYKRGTGGRSSFNGIVATVFGCT 63
           +A + L  + G+ SVVY    AA Y   S   P ++A +K G GG S    I+A +   T
Sbjct: 76  RAEASLSSVLGAPSVVYSSGLAAIYGLLSYLNPKHIAVHKPGFGGYSGTIQIIARINRLT 135

Query: 64  GFVGRYVCNKLGKIG 78
           G    ++  K   IG
Sbjct: 136 GLETSFIDGKCDAIG 150


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 114 EESIAKAVRYSNVVINLVGRDYETKNFKYND 144
           +ESI+ +   SN+ ++L  R Y+TK  K+N+
Sbjct: 166 KESISSSTN-SNIKLHLAARKYQTKPEKFNE 195


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 176 HPKPLVLKKPSAWKISKYLGECAVREEY 203
           H  P  L +PSA ++ KYL E A +  Y
Sbjct: 4   HDPPAPLSQPSASRLQKYLLESAEKHAY 31


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 31  YSSDRKPNLAAYKRGTGGRSSFNGIVATVFGCTGFVGRYV---CNKLGKIGTQLI 82
           Y SD  PNL A   G  G     G+V  +  C  ++ R +   C KL  +  Q++
Sbjct: 140 YISDNCPNLKALNIGNCGLVEDTGMVQIIKRCP-YLNRLIIPNCRKLTDVSLQIL 193


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 110 HLLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLS 169
           H L   S AK+     +  +  G D  + N K  +VH++ V +IA     EG+ R     
Sbjct: 58  HRLSSVSYAKSRTRLELTSSSHGSDTRSFNDKTKNVHLERVEKIASEWDPEGL-RVCFWD 116

Query: 170 YLNAEEHPKPLVLK--KPSAWKISKYL 194
            +N ++ P  L+L+  +   W +   L
Sbjct: 117 AVNCDD-PDGLLLRFLRARKWNVEAAL 142


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.138    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,920,098
Number of Sequences: 5004
Number of extensions: 85225
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 9
length of query: 399
length of database: 2,362,478
effective HSP length: 74
effective length of query: 325
effective length of database: 1,992,182
effective search space: 647459150
effective search space used: 647459150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)