Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000897-TA|BGIBMGA000897-PA|IPR001509|NAD-dependent
epimerase/dehydratase
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)             274   8e-74
SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.23 
SB_27528| Best HMM Match : Epimerase (HMM E-Value=3.2e-06)             29   5.0  
SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_57648| Best HMM Match : Homeobox (HMM E-Value=5.3e-30)              29   8.8  

>SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score =  274 bits (672), Expect = 8e-74
 Identities = 130/253 (51%), Positives = 183/253 (72%), Gaps = 8/253 (3%)

Query: 43  KRGTGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLG 102
           K+GTGGRSSFNG+ ATVFG TGF+GRYV N+LG++GTQL +PYRGD +D + L++ GDLG
Sbjct: 9   KKGTGGRSSFNGVSATVFGATGFLGRYVINRLGRVGTQLTVPYRGDEHDIRHLRLMGDLG 68

Query: 103 QVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGV 162
           Q+ F  +HL DEESIAK V++SNVV+NL+GR +ET+NF + +VHVDG R IA+  +E GV
Sbjct: 69  QIDFFDFHLKDEESIAKMVKHSNVVVNLIGRGFETRNFNFEEVHVDGARTIAKAAKEAGV 128

Query: 163 ERFIHLSYLNAEEHPKPLVLKKPSAWKISKYLGECAVREEYPTATIIRASDIYGSEDRFL 222
           ER IH+S LNA        +  PS +  +K LGE AVREE+P ATI+R   ++G ED+FL
Sbjct: 129 ERLIHVSALNA-------AVDSPSKFLHTKALGEQAVREEFPNATILRPGTVFGHEDKFL 181

Query: 223 RSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAARDDDTKCEVYQAVGPKRYL 282
            +    +RS    +PL + G+ T K PV+V+DVAQ I+ A +++ +  + ++ VGP  Y 
Sbjct: 182 -NYYAYLRSLPLGIPLIEGGMNTKKMPVYVADVAQSILEAIKEEASVGQTFELVGPSEYY 240

Query: 283 LADLVDWFYKLMR 295
           L D++D+ Y++M+
Sbjct: 241 LYDIIDYIYRVMK 253


>SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 976

 Score = 33.9 bits (74), Expect = 0.23
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 9   QATS-KLLHLNGSMSVVYIKAANYS-SDRKPNLAAYKR-GTGGRSSFNGIVATVFGCTGF 65
           QA S +L  LN ++S  ++K   Y   + +  L  Y+R G    S FNG V  + G +  
Sbjct: 822 QARSHRLTVLNNAVSFPFVKYFIYEYQEAELTLHFYERFGVDPGSVFNGKVVWITGASSG 881

Query: 66  VGRYVCNKLGKIGTQLILPYR 86
           +G ++  +  K G++L+L  R
Sbjct: 882 IGEHLAYEFTKHGSKLVLSAR 902


>SB_27528| Best HMM Match : Epimerase (HMM E-Value=3.2e-06)
          Length = 441

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 59 VFGCTGFVGRYVCNKLGKIGTQLILPYRGDFY 90
          VFG  GF+G  V ++L K G  + +  RG++Y
Sbjct: 30 VFGGNGFIGSEVVSRLIKQGDDITIVNRGNWY 61


>SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1644

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 134  DYETKNFKYNDVHVDGVRRIARICREEGVERFIHLSYLNAEEHPKPLVLKKPSAWKISKY 193
            DYE +N    D+  D   ++A +    G E    L Y        PL+   P  W+IS Y
Sbjct: 1171 DYENQNETRPDILSDIKSKLASLRVVSGPELRTQLFYKEHAIPGTPLLSMPP--WEISLY 1228

Query: 194  LGECAVREEYPTAT 207
            L +  +RE+    T
Sbjct: 1229 LDKNKIREDNSVET 1242


>SB_57648| Best HMM Match : Homeobox (HMM E-Value=5.3e-30)
          Length = 205

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 371 ELKPFRAHQYYMDRLGEFPKPDP 393
           +L P R  QY M R G FP+P P
Sbjct: 43  DLLPPRRDQYMMQRQGTFPEPTP 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.138    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,954,634
Number of Sequences: 59808
Number of extensions: 600240
Number of successful extensions: 1117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1112
Number of HSP's gapped (non-prelim): 5
length of query: 399
length of database: 16,821,457
effective HSP length: 84
effective length of query: 315
effective length of database: 11,797,585
effective search space: 3716239275
effective search space used: 3716239275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)