Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000897-TA|BGIBMGA000897-PA|IPR001509|NAD-dependent
epimerase/dehydratase
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336... 138 5e-33
02_05_1108 - 34166672-34166695,34166864-34166932,34167031-341671... 40 0.003
02_05_1103 - 34136955-34136978,34137147-34137215,34137314-341374... 40 0.003
02_05_1100 - 34108581-34108584,34109646-34109701,34110470-341105... 40 0.003
02_05_0515 + 29689259-29689535,29689867-29690209,29690475-296907... 33 0.53
05_01_0228 + 1692117-1692924,1693321-1693431,1693536-1693675,169... 32 0.70
03_01_0593 + 4379263-4379377,4380359-4380491,4380585-4380656,438... 32 0.93
01_01_0043 - 321810-321973,322054-322846 31 1.2
01_01_0044 - 326337-326500,326618-327398 31 1.6
01_05_0612 - 23652121-23652400,23653031-23654427 31 2.1
01_01_0968 - 7618357-7618529,7618891-7619094,7620896-7621139,762... 31 2.1
12_01_0844 + 7915121-7915225,7915724-7915777,7915888-7915968,791... 30 2.8
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570... 30 3.7
07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,411... 29 4.9
05_02_0131 - 6919143-6920125,6920334-6920529 29 4.9
05_02_0128 - 6890918-6891900,6892929-6893124 29 4.9
11_06_0754 - 26935647-26937780,26940890-26941827 29 6.5
05_01_0297 - 2314687-2316021 29 6.5
07_03_1727 + 29068348-29068571,29069473-29069514,29069593-290698... 29 8.6
02_04_0592 - 24171698-24172285 29 8.6
>02_05_1223 +
35033273-35033353,35033455-35033539,35033613-35033683,
35034400-35034531,35034654-35034769,35035128-35035251,
35035349-35035417,35035508-35035628,35035707-35035843
Length = 311
Score = 138 bits (335), Expect = 5e-33
Identities = 84/230 (36%), Positives = 135/230 (58%), Gaps = 14/230 (6%)
Query: 77 IGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYE 136
+G+Q+++P+RG + LK+ GDLGQ++ Y+ D +SI + SNVVINL+GR+YE
Sbjct: 1 MGSQVLVPFRGSEDCHRHLKLMGDLGQIVPMKYNPRDVDSIKAVMAKSNVVINLIGREYE 60
Query: 137 TKNFKYNDVHVDGVRRIARICREE-GVERFIHLSYLNAEEHPKPLVLKKPSAWKISKYLG 195
T+N+ +++V+ ++A I +E G+ RFI +S L A PS +K G
Sbjct: 61 TRNYGFDEVNHHMAEQLAMISKEHGGIMRFIQVSSLGAS-------ASSPSRMLRAKAAG 113
Query: 196 ECAVREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDV 255
E +V +E+P ATI+R + + G+EDR L + + +PL +G +T QPV+V DV
Sbjct: 114 EESVLKEFPEATIMRPATMIGTEDRILNRWA-QFAKNWGFLPLVDSG-STKIQPVYVVDV 171
Query: 256 AQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYI 304
A IVN+ +DD T + Y+ GP+ Y + +L + Y+ +R +W YI
Sbjct: 172 AAAIVNSLKDDGTSMGKTYELGGPEIYTVHELAELMYETIR---EWPRYI 218
>02_05_1108 -
34166672-34166695,34166864-34166932,34167031-34167154,
34167192-34167256,34167726-34167854,34168473-34168547,
34171613-34171777,34171864-34172063,34172866-34172963,
34173719-34173819,34173915-34174040
Length = 391
Score = 39.9 bits (89), Expect = 0.003
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 248 QPVFVSDVAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYI 304
QPV+V DVA IVN+ +DD T + Y GP+ Y + DL + Y+ + +W YI
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAELMYETIC---EWPRYI 376
>02_05_1103 -
34136955-34136978,34137147-34137215,34137314-34137437,
34137475-34137539,34138009-34138137,34138756-34138830,
34141896-34142060,34142147-34142346,34143149-34143246,
34144002-34144102,34144198-34144323
Length = 391
Score = 39.9 bits (89), Expect = 0.003
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 248 QPVFVSDVAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYI 304
QPV+V DVA IVN+ +DD T + Y GP+ Y + DL + Y+ + +W YI
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAELMYETIC---EWPRYI 376
>02_05_1100 -
34108581-34108584,34109646-34109701,34110470-34110509,
34110955-34111066,34111690-34111767,34112004-34112088,
34112596-34112664,34112763-34112886,34112924-34112988,
34113458-34113586,34114205-34114279,34117344-34117508,
34117595-34117794,34118597-34118694,34119450-34119550,
34119649-34119774
Length = 508
Score = 39.9 bits (89), Expect = 0.003
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 248 QPVFVSDVAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYI 304
QPV+V DVA IVN+ +DD T + Y GP+ Y + DL + Y+ + +W YI
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAELMYETIC---EWPRYI 376
>02_05_0515 +
29689259-29689535,29689867-29690209,29690475-29690746,
29691282-29691478,29691874-29692237,29692831-29692898
Length = 506
Score = 32.7 bits (71), Expect = 0.53
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 114 EESIAKAVRYSNVVINLVGRDYETKNF----KYNDVHVDGVRRIARICREEGVERFIHLS 169
+E + KA+R + V +L K + ++V+++G + C E GV R +++S
Sbjct: 98 KEDVGKALRGVDCVFHLASYGMSGKEMVQAGRADEVNINGTCNVLDACHEHGVRRLVYVS 157
Query: 170 YLNAEEHPKPLV 181
N +P+V
Sbjct: 158 TYNVVFGGEPIV 169
>05_01_0228 +
1692117-1692924,1693321-1693431,1693536-1693675,
1693865-1694075,1694148-1694415,1694543-1694696,
1694795-1695123,1695748-1695835
Length = 702
Score = 32.3 bits (70), Expect = 0.70
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 157 CREEGVERFIHLSYLNAEEHPKPLVLKKPSAWKISKYLGECAVREEYPTATIIRASDIYG 216
C EEG + H+ L A+ P +P WK+ + LG + E P T +I G
Sbjct: 586 CTEEGALKVFHVGLLCAQASPN----LRPPMWKVVEMLG--SRNNELPRPTQPPFINIKG 639
Query: 217 SEDRFLRSLVNKMRSHSNLMPLYKNGLA 244
S + S + ++S S+ P N L+
Sbjct: 640 SNAKSDSSGSSSLKSSSDKSPFSLNQLS 667
>03_01_0593 +
4379263-4379377,4380359-4380491,4380585-4380656,
4380739-4380813,4380896-4380967,4381055-4381126,
4381251-4381322,4381403-4381468,4381547-4381612,
4381689-4381978,4382072-4382355,4382690-4382961,
4383411-4383546,4383840-4383970,4384078-4384234,
4384334-4384477
Length = 718
Score = 31.9 bits (69), Expect = 0.93
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 346 NVVIGVPTLEDLGVTLTHMEDQVPWELKPFRAHQYYMDRLGEFPKPDPPPVYSA 399
NV+ +P L+DL V H +P +LK Q + P P PPP YSA
Sbjct: 216 NVLANLP-LDDLNVANNHFTGWIPSQLKKINNLQTDGNSWSNGPAPPPPP-YSA 267
>01_01_0043 - 321810-321973,322054-322846
Length = 318
Score = 31.5 bits (68), Expect = 1.2
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 46 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 101
+GG + V G TG++GR+V ++G T L+ D AQ L D
Sbjct: 3 SGGDQTTTKSRILVVGGTGYIGRHVVAASARLGHPTTALVRDLAPSDPAKAQLLHTFRDA 62
Query: 102 GQVLFTPYHLLDEESIAKAVRYSNVVINLV 131
G L L D S+ +AVR ++VVI+ V
Sbjct: 63 GVTLLHG-DLHDHASLLRAVRDADVVISAV 91
>01_01_0044 - 326337-326500,326618-327398
Length = 314
Score = 31.1 bits (67), Expect = 1.6
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 46 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 101
+GG + I+ V G TG++GR+V ++G T L+ D +Q L+ D
Sbjct: 3 SGGEEKKSRIL--VVGGTGYIGRHVVLASARLGHPTTALVRDLSPSDPAKSQLLQSFRDA 60
Query: 102 GQVLFTPYHLLDEESIAKAVRYSNVVINLVG 132
G L L D S+ AVR ++VVI+ +G
Sbjct: 61 GVTLLHG-DLYDHASLLSAVRDADVVISTLG 90
>01_05_0612 - 23652121-23652400,23653031-23654427
Length = 558
Score = 30.7 bits (66), Expect = 2.1
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 145 VHVDGVRRIARICREEGVERFIHLSYL-NAEEHPKPLVLKKPSAWKISKYLG 195
+++DG R I +CR G HL + + + L + +P A K+ KY+G
Sbjct: 170 INIDGSRNIGILCRNNGEFVVAHLGGMTSVGDGGSGLPITRPVAAKLCKYVG 221
>01_01_0968 -
7618357-7618529,7618891-7619094,7620896-7621139,
7623008-7623151,7623272-7623487
Length = 326
Score = 30.7 bits (66), Expect = 2.1
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 17/134 (12%)
Query: 46 TGGRSSFNGIVATVFGCTGFVGRYVCNK---LGKIGTQLILPYRGDF---YDAQRLKVCG 99
T + S N V G TG +GR++ G L+ P D+ + K+
Sbjct: 2 TKTKKSNNDSTILVIGGTGIIGRHIVAASLDAGHPTLVLVRPTAASAAVDVDSDKAKLLA 61
Query: 100 DLGQVLFTPYH--LLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARIC 157
L T + + D ES+ A+R ++VVI+ VG V +DG ++
Sbjct: 62 SLVASGATIVYGDMNDRESLVAAIRQADVVISAVGH--------RGTVELDGQLKVVEAI 113
Query: 158 REEG-VERFIHLSY 170
+E G V+RF+ Y
Sbjct: 114 KEAGNVKRFVPSEY 127
>12_01_0844 +
7915121-7915225,7915724-7915777,7915888-7915968,
7916164-7916209,7916311-7916405,7916581-7916613,
7916941-7917286,7917372-7917511
Length = 299
Score = 30.3 bits (65), Expect = 2.8
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 48 GRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDL 101
GR+ VA V G + +GR + LGK G ++I+ Y +A+ +VC ++
Sbjct: 3 GRAKLAAPVAVVTGASRGIGRAIAVALGKAGCKVIVNYAKSGMEAE--EVCREI 54
>03_02_0719 +
10654842-10654977,10655039-10655124,10655226-10657001,
10657782-10657926,10658017-10658735
Length = 953
Score = 29.9 bits (64), Expect = 3.7
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Query: 185 PSAWKISKYLGECAVREEYPTATIIRASDIYGSEDRFLRSLVN--KMRSHSNLMPLYKNG 242
PS K S+Y+ C + I R S + E S+ N K + H +L PL
Sbjct: 636 PSEGKPSQYVDYCQSAQSSTKGQIFRGSKLQVEEPEECSSISNARKEQEHEDLSPLSVLE 695
Query: 243 LATVKQPVFVSDVAQGIVNAARDDDTKCEVYQAVGPKRYL 282
+ + + SD G + ++ + EV PK +L
Sbjct: 696 PTFLNESCWSSDCCSGSSDGSKGYSSSSEVKNM--PKNFL 733
>07_01_0552 +
4109906-4109983,4110422-4110484,4110496-4110525,
4110567-4110621,4111046-4111143,4112259-4112417,
4112518-4112577,4113436-4113624,4113749-4113802,
4113959-4114045,4114149-4114881,4115282-4115373,
4115739-4115812,4116097-4116199,4116342-4117204,
4117649-4117724,4117861-4117972,4118092-4118168,
4118272-4118352,4118710-4118789,4118860-4118875
Length = 1059
Score = 29.5 bits (63), Expect = 4.9
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 226 VNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAARDDDTKCEVYQAVG 277
+NK + H+ + PLYK ++ P+F+S + + V TK +Y+A G
Sbjct: 876 LNK-KFHARIKPLYKQRFFSILMPIFLSKIKESTVMT-----TKLVLYRAFG 921
>05_02_0131 - 6919143-6920125,6920334-6920529
Length = 392
Score = 29.5 bits (63), Expect = 4.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 152 RIARICREEGVE-RFIHLSYLNAEEHPKPLVLKKPS 186
++ RIC G+E R+IHL EHP+ + PS
Sbjct: 61 KMKRICHRSGIEKRYIHLDEKLIREHPEIIDKHMPS 96
>05_02_0128 - 6890918-6891900,6892929-6893124
Length = 392
Score = 29.5 bits (63), Expect = 4.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 152 RIARICREEGVE-RFIHLSYLNAEEHPKPLVLKKPS 186
++ RIC G+E R+IHL EHP+ + PS
Sbjct: 61 KMKRICHRSGIEKRYIHLDEKLIREHPEIIDKHMPS 96
>11_06_0754 - 26935647-26937780,26940890-26941827
Length = 1023
Score = 29.1 bits (62), Expect = 6.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 160 EGVERFIHLSYLNAEEHPKPLVL 182
EG+++ + LSY N EH KP VL
Sbjct: 446 EGIKQVLDLSYNNLSEHLKPCVL 468
>05_01_0297 - 2314687-2316021
Length = 444
Score = 29.1 bits (62), Expect = 6.5
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 283 LADLVDWFYKLMRKDEKWGGYIRYDMKYDPILPLKVALVNAISPAYPLGNLHWEGIEREA 342
L+DL D ++ +R K+ + R ++D ++ AL A+ P YPL E ER+
Sbjct: 33 LSDLDD--HETLRVQVKFAFFYRAGGEHDAAGVVRRALGEALVPYYPLAGRVREVEERKL 90
Query: 343 TSDNVVIGVPTLE-DLGVTLTHMED 366
D GV +E D V L +E+
Sbjct: 91 VVDCTGEGVLFVEADADVRLEELEE 115
>07_03_1727 +
29068348-29068571,29069473-29069514,29069593-29069839,
29069936-29070013,29070551-29070736,29070829-29071126,
29071775-29072244
Length = 514
Score = 28.7 bits (61), Expect = 8.6
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 56 VATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLK-VC--GDLGQVLFTPYHLL 112
+A V G +G VC +L G +IL R + ++ +C +L ++F +L
Sbjct: 90 LAVVTGGNRGIGLEVCRQLALQGVTVILTARDEKRGKDAVESLCHESNLSNIIFHQLDIL 149
Query: 113 DEESIAKAVRYSN 125
D S A RY N
Sbjct: 150 DGNSRASLARYIN 162
>02_04_0592 - 24171698-24172285
Length = 195
Score = 28.7 bits (61), Expect = 8.6
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 348 VIGVPTLEDLGVTL--THMEDQVPWEL-KPFRAHQYYMDRLGEFPKPDPPP 395
++G P +DL + T M+D+V L + + Y +++L + P+ DPPP
Sbjct: 124 LVGEPRRKDLWILCRQTSMDDEVYGRLLEKAKEEGYDVEKLRKTPQDDPPP 174
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.138 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,198,801
Number of Sequences: 37544
Number of extensions: 540788
Number of successful extensions: 1103
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1091
Number of HSP's gapped (non-prelim): 20
length of query: 399
length of database: 14,793,348
effective HSP length: 84
effective length of query: 315
effective length of database: 11,639,652
effective search space: 3666490380
effective search space used: 3666490380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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