GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000897-TA|BGIBMGA000897-PA|IPR001509|NAD-dependent
epimerase/dehydratase
         (399 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical ...   265   4e-71
U64862-7|AAB52622.1|  374|Caenorhabditis elegans Hypothetical pr...    33   0.36 
U80029-10|AAB37589.1|  460|Caenorhabditis elegans Hypothetical p...    32   0.62 
Z37093-3|CAA85465.1|  448|Caenorhabditis elegans Hypothetical pr...    30   3.3  
AC006723-5|AAK68424.1|  575|Caenorhabditis elegans Hypothetical ...    29   5.8  

>AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.2 protein.
          Length = 431

 Score =  265 bits (649), Expect = 4e-71
 Identities = 161/391 (41%), Positives = 220/391 (56%), Gaps = 7/391 (1%)

Query: 9   QATSKLLHLNGSMSVVYIKAANYSSDRKPNLAAYKRGTGGRSSFNGIVATVFGCTGFVGR 68
           QA S +   N S +V   + A+         A +++G GGR+SF+G V TVFG +GF+G 
Sbjct: 14  QAVSVVGSQNFSSAVTSAENAHPEPRVSSQSAQFRKGAGGRASFSGNVVTVFGASGFLGL 73

Query: 69  YVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVI 128
            V NK  K G+Q+I+PYR D Y  +  KV G+LGQVL+ P+ L+DEESI KAV+YSNVVI
Sbjct: 74  PVVNKFAKNGSQIIIPYRQDPYYMREHKVLGELGQVLYFPFELMDEESIRKAVKYSNVVI 133

Query: 129 NLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLSYLNAEEHPKPLVLKKPSAW 188
           NL+G    T  + Y DV+  G RR+ARIC+E GVE+F+HLS L A   P+       S +
Sbjct: 134 NLIGTRVPTGKYNYYDVNDTGARRLARICKEMGVEKFVHLSALGATTQPQKGHFVAKSQF 193

Query: 189 KISKYLGECAVREEYPTATIIRASDIYGSEDRFLRSLVNKMR-SHSNLMPLYKNGLATVK 247
             SK LGE AVREE+P ATIIR S IYG  D F++  V++ R +  + + LYK G  T K
Sbjct: 194 LHSKGLGEVAVREEFPEATIIRPSVIYGELDGFIQYYVSRWRKTPLDYVYLYKKGEETYK 253

Query: 248 QPVFVSDVAQGIVNAARDDDTKCEVYQAVGPKRYLLADLVDWFYKLMRKDEKWG-GYIRY 306
            P++V DVA GI +A  D   K   Y+ VGP  Y L++L+D+ YK       +G  Y R+
Sbjct: 254 MPIWVGDVAAGIQSAVNDPTAKGHTYEFVGPHCYQLSELIDFMYKKAHCLSDFGFRYKRH 313

Query: 307 DM--KYDPILPLKVALVNAISPAYPLGNLHWEGIEREATSDNVVIGVPTLEDLGV-TLTH 363
            M   Y   L +   L   +       N  W  +E      +++ G  TL DLGV  LT 
Sbjct: 314 GMPDPYFMALTMATELYGKVFKCKVPLNREW--MEFVEVQSDILTGERTLADLGVRRLTE 371

Query: 364 MEDQVPWELKPFRAHQYYMDRLGEFPKPDPP 394
            E     +      ++Y+ ++ GE P P  P
Sbjct: 372 FELAGGQQAFYRSFNRYFEEQYGELPAPSLP 402


>U64862-7|AAB52622.1|  374|Caenorhabditis elegans Hypothetical
           protein ZC8.1 protein.
          Length = 374

 Score = 33.1 bits (72), Expect = 0.36
 Identities = 28/127 (22%), Positives = 62/127 (48%), Gaps = 7/127 (5%)

Query: 59  VFGCTGFVGRYVCNKLGKIGT-QLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESI 117
           + G  GF+G +V + L KIG  + I+       + + +K+  D   + +     LD++ +
Sbjct: 6   IVGGGGFLGAHVISALQKIGCKERIIVVDPCPQEFKTIKI--DKSNISYIKASFLDDKVL 63

Query: 118 AKAVRYSNVVINL--VGRD--YETKNFKYNDVHVDGVRRIARICREEGVERFIHLSYLNA 173
              +  ++ V++L  VG            ++ +V+G +++ + C+  GV+RF++ S +  
Sbjct: 64  ENILNGASAVVHLAAVGHTGLIAGDRKSVHNFNVNGTKQLIKQCKALGVKRFLYASSVAV 123

Query: 174 EEHPKPL 180
               +PL
Sbjct: 124 SFIGEPL 130


>U80029-10|AAB37589.1|  460|Caenorhabditis elegans Hypothetical
           protein T20D4.8 protein.
          Length = 460

 Score = 32.3 bits (70), Expect = 0.62
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 301 GGYIRYDMKYDP----ILPLKVALVNAISPAYP-LGNLHWEGIEREATSDNVVIGVPTLE 355
           G YI  D   DP    I  LK+ L+N  +  +     +H E +++E  S+     + TLE
Sbjct: 68  GTYITLDQILDPDSLMIWYLKIELLNTTTADFDYFFKMHSEYVKKENKSEKFSFVMETLE 127

Query: 356 DLGVTLTHM 364
           ++ VTLT++
Sbjct: 128 NVNVTLTNI 136


>Z37093-3|CAA85465.1|  448|Caenorhabditis elegans Hypothetical
           protein ZK669.4 protein.
          Length = 448

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 114 EESIAKAVR-YSNVVINLVGRDYETKNFKYND-VHVDGVRRIARICREEGVERFIHLSYL 171
           +E +A  +R Y+  ++  +    +  +F YND ++VD + +     +E   ER I LSY+
Sbjct: 215 KEDVAVPIRGYTRAMVKTMTEALKIPHFGYNDEINVDSLVKYRAELKEFAKERHIKLSYM 274


>AC006723-5|AAK68424.1|  575|Caenorhabditis elegans Hypothetical
           protein Y19D10B.5 protein.
          Length = 575

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 301 GGYIRYDMKYDP----ILPLKVALVNAISPAYP-LGNLHWEGIEREATSDNVVIGVPTLE 355
           G YI  D   DP    I  LK+ L+N  +  +     +H E +++E  S+     V TLE
Sbjct: 81  GTYITLDEILDPDSLMIWYLKIELLNTTTADFDYFFKMHREYVKKENKSEKFSFVVETLE 140

Query: 356 DLGVTL 361
           ++ VT+
Sbjct: 141 NVNVTI 146


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.138    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,280,872
Number of Sequences: 27539
Number of extensions: 454372
Number of successful extensions: 866
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 5
length of query: 399
length of database: 12,573,161
effective HSP length: 83
effective length of query: 316
effective length of database: 10,287,424
effective search space: 3250825984
effective search space used: 3250825984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)