Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000897-TA|BGIBMGA000897-PA|IPR001509|NAD-dependent
epimerase/dehydratase
(399 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g20360.1 68415.m02377 expressed protein 180 2e-45
At1g19540.1 68414.m02434 isoflavone reductase, putative similar ... 38 0.009
At1g47290.2 68414.m05236 3-beta hydroxysteroid dehydrogenase/iso... 36 0.036
At1g47290.1 68414.m05235 3-beta hydroxysteroid dehydrogenase/iso... 36 0.036
At2g43420.1 68415.m05396 3-beta hydroxysteroid dehydrogenase/iso... 34 0.19
At1g75290.1 68414.m08746 isoflavone reductase, putative similar ... 33 0.33
At1g75280.1 68414.m08745 isoflavone reductase, putative identica... 33 0.33
At2g44040.1 68415.m05475 dihydrodipicolinate reductase family pr... 32 0.58
At1g75300.1 68414.m08747 isoflavone reductase, putative identica... 32 0.58
At2g45310.1 68415.m05639 NAD-dependent epimerase/dehydratase fam... 31 1.8
At5g01690.1 68418.m00086 cation/hydrogen exchanger, putative (CH... 30 2.4
At5g10730.1 68418.m01243 expressed protein 30 3.1
At1g22980.1 68414.m02871 expressed protein 30 3.1
At5g13490.1 68418.m01556 ADP, ATP carrier protein 2, mitochondri... 29 4.1
At3g59890.2 68416.m06683 dihydrodipicolinate reductase family pr... 29 4.1
At3g59890.1 68416.m06684 dihydrodipicolinate reductase family pr... 29 4.1
At3g23660.1 68416.m02975 transport protein, putative similar to ... 29 4.1
At1g32220.1 68414.m03963 expressed protein 29 4.1
At3g03980.1 68416.m00419 short-chain dehydrogenase/reductase (SD... 29 5.4
At2g34070.1 68415.m04171 expressed protein 29 7.2
At1g30000.1 68414.m03669 glycoside hydrolase family 47 protein s... 29 7.2
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t... 28 9.5
>At2g20360.1 68415.m02377 expressed protein
Length = 402
Score = 180 bits (438), Expect = 2e-45
Identities = 109/292 (37%), Positives = 171/292 (58%), Gaps = 18/292 (6%)
Query: 16 HLNGSMSVVYIKAANYSSDRKPNLAAYKRGTGGRSSFNGIVATVFGCTGFVGRYVCNKLG 75
HLNG+ + Y +++ ++ +LA ++GTGGRSS +GIVATVFG TGF+GRY+ +L
Sbjct: 34 HLNGTDNCRY--SSSLATKGVGHLA--RKGTGGRSSVSGIVATVFGATGFLGRYLVQQLA 89
Query: 76 KIGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDY 135
K+G+Q+++P+RG + LK+ GDLGQV+ + DE+SI + +NVVINL+GR+Y
Sbjct: 90 KMGSQVLVPFRGSEDSPRHLKLMGDLGQVVPMKFDPRDEDSIKAVMAKANVVINLIGREY 149
Query: 136 ETKNFKYNDVHVDGVRRIARICREE-GVERFIHLSYLNAEEHPKPLVLKKPSAWKISKYL 194
ET+NF + D + ++A + +E G+ R+I +S L A + PS +K
Sbjct: 150 ETRNFSFEDANHHIAEKLALVAKEHGGIMRYIQVSCLGAS-------VSSPSRMLRAKAA 202
Query: 195 GECAVREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSD 254
E AV P ATI+R + + G+EDR L ++ + +PL G T QPV+V D
Sbjct: 203 AEEAVLNALPEATIMRPATMIGTEDRILNPWSMFVKKY-GFLPLIGGG-TTKFQPVYVVD 260
Query: 255 VAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYIR 305
VA IV A +DD + + Y+ GP + +L + Y ++R +W Y++
Sbjct: 261 VAAAIVAALKDDGSSMGKTYELGGPDVFTTHELAEIMYDMIR---EWPRYVK 309
>At1g19540.1 68414.m02434 isoflavone reductase, putative similar to
SP|P52577; contains isoflavone reductase domain PF02716
Length = 310
Score = 38.3 bits (85), Expect = 0.009
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 59 VFGCTGFVGRYVCNKLGKIGTQLILPYR----GDFYDAQRLKVCGDLGQVLFTPYHLLDE 114
V G TG +G+ + + K G R D AQ ++ DLG + L D+
Sbjct: 7 VIGATGLIGKVLVEESAKSGHATFALVREASLSDPVKAQLVERFKDLGVTILYG-SLSDK 65
Query: 115 ESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICR 158
ES+ KA++ +VVI+ VGR ++T+ ++ +D ++ + R
Sbjct: 66 ESLVKAIKQVDVVISAVGR-FQTEILNQTNI-IDAIKESGNVKR 107
>At1g47290.2 68414.m05236 3-beta hydroxysteroid
dehydrogenase/isomerase family protein contains Pfam
profile PF01073 3-beta hydroxysteroid
dehydrogenase/isomerase domain; similar to
NAD(P)-dependent steroid dehydrogenase from Homo sapiens
[SP|Q15738], Mus musculus [SP|Q9R1J0]
Length = 439
Score = 36.3 bits (80), Expect = 0.036
Identities = 57/247 (23%), Positives = 103/247 (41%), Gaps = 23/247 (9%)
Query: 102 GQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYETKNFKYN-DVHVDGVRRIARICREE 160
G+V + L ++ + K + + VV ++ D N + V+V G + C E
Sbjct: 64 GRVQYVSADLRNKTQVVKGFQGAEVVFHMAAPDSSINNHQLQYSVNVQGTTNVIDACIEV 123
Query: 161 GVERFIHLS-----------YLNAEEHPKPLVLKKPSAWKISKYLGECAVREEYPTATI- 208
GV+R I+ S LNA+E P K ++ +K GE + + + +
Sbjct: 124 GVKRLIYTSSPSVVFDGVHGTLNADE-SLPYPPKHNDSYSATKAEGEALILKANGRSGLL 182
Query: 209 ---IRASDIYGSEDRFL-RSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAAR 264
IR S I+G D+ + SLV R+ + + +G + +V +V V A R
Sbjct: 183 TCCIRPSSIFGPGDKLMVPSLVTAARAGKSKF-IIGDG-SNFYDFTYVENVVHAHVCAER 240
Query: 265 DDDTKCEVYQAVGPKRYLLADLVD-WFYKLMRKDEKWGGYIRYDMKYDPILPLKVALVNA 323
+ EV + Y + ++ F++ M + + GY R +K L + +A +
Sbjct: 241 ALASGGEVCAKAAGQAYFITNMEPIKFWEFMSQLLEGLGYERPSIKIPASLMMPIAYL-- 298
Query: 324 ISPAYPL 330
+ AY L
Sbjct: 299 VELAYKL 305
>At1g47290.1 68414.m05235 3-beta hydroxysteroid
dehydrogenase/isomerase family protein contains Pfam
profile PF01073 3-beta hydroxysteroid
dehydrogenase/isomerase domain; similar to
NAD(P)-dependent steroid dehydrogenase from Homo sapiens
[SP|Q15738], Mus musculus [SP|Q9R1J0]
Length = 382
Score = 36.3 bits (80), Expect = 0.036
Identities = 57/247 (23%), Positives = 103/247 (41%), Gaps = 23/247 (9%)
Query: 102 GQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYETKNFKYN-DVHVDGVRRIARICREE 160
G+V + L ++ + K + + VV ++ D N + V+V G + C E
Sbjct: 64 GRVQYVSADLRNKTQVVKGFQGAEVVFHMAAPDSSINNHQLQYSVNVQGTTNVIDACIEV 123
Query: 161 GVERFIHLS-----------YLNAEEHPKPLVLKKPSAWKISKYLGECAVREEYPTATI- 208
GV+R I+ S LNA+E P K ++ +K GE + + + +
Sbjct: 124 GVKRLIYTSSPSVVFDGVHGTLNADE-SLPYPPKHNDSYSATKAEGEALILKANGRSGLL 182
Query: 209 ---IRASDIYGSEDRFL-RSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAAR 264
IR S I+G D+ + SLV R+ + + +G + +V +V V A R
Sbjct: 183 TCCIRPSSIFGPGDKLMVPSLVTAARAGKSKF-IIGDG-SNFYDFTYVENVVHAHVCAER 240
Query: 265 DDDTKCEVYQAVGPKRYLLADLVD-WFYKLMRKDEKWGGYIRYDMKYDPILPLKVALVNA 323
+ EV + Y + ++ F++ M + + GY R +K L + +A +
Sbjct: 241 ALASGGEVCAKAAGQAYFITNMEPIKFWEFMSQLLEGLGYERPSIKIPASLMMPIAYL-- 298
Query: 324 ISPAYPL 330
+ AY L
Sbjct: 299 VELAYKL 305
>At2g43420.1 68415.m05396 3-beta hydroxysteroid
dehydrogenase/isomerase family protein contains Pfam
profile PF01073 3-beta hydroxysteroid
dehydrogenase/isomerase domain; similar to
NAD(P)-dependent steroid dehydrogenase from Homo sapiens
[SP|Q15738], Mus musculus [SP|Q9R1J0]
Length = 561
Score = 33.9 bits (74), Expect = 0.19
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
Query: 59 VFGCTGFVGRYVCNKLGKIGTQLI-LPYRGDFYDAQR----LKVCGDLGQVLFTPYHLLD 113
V G GF+GR + ++L ++G + + G L+ G+ + + D
Sbjct: 17 VLGGRGFIGRSLVSRLLRLGNWTVRVADSGHTLHLDESDSLLEDALSSGRASYHCVDVRD 76
Query: 114 EESIAKAVRYSNVVINLVGRDYETKN-FKYNDVHVDGVRRIARICREEGVERFIHLS 169
+ I K S VV + D + + F V V G R + CRE GV + I+ S
Sbjct: 77 KPQIVKVTEGSYVVFYMGATDLRSHDYFDCYKVIVQGTRNVISACRESGVRKLIYNS 133
>At1g75290.1 68414.m08746 isoflavone reductase, putative similar to
SP|P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-)
{Arabidopsis thaliana}; contains Pfam profile PF02716:
Isoflavone reductase
Length = 323
Score = 33.1 bits (72), Expect = 0.33
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 59 VFGCTGFVGRYVCNKLGKIG-TQLILPYRGDFYDAQRLKVCGDLGQVLFTPYH--LLDEE 115
V G TG +G+ + K G + L L D + K + T H L D E
Sbjct: 10 VIGGTGHIGKLIIEASVKAGHSTLALVREASLSDPNKGKTVQNFKDFGVTLLHGDLNDHE 69
Query: 116 SIAKAVRYSNVVINLVG 132
S+ KA++ ++VVI+ VG
Sbjct: 70 SLVKAIKQADVVISTVG 86
>At1g75280.1 68414.m08745 isoflavone reductase, putative identical
to SP|P52577 Isoflavone reductase homolog P3 (EC
1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile
PF02716: isoflavone reductase
Length = 310
Score = 33.1 bits (72), Expect = 0.33
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 59 VFGCTGFVGRYVCNKLGKIG-TQLILPYRGDFYDAQRLKVCGDLGQVLFTPYH--LLDEE 115
V G TG++G+++ K G + L D + K + T H L D E
Sbjct: 10 VIGGTGYIGKFLVEASAKAGHSTFALVREATLSDPVKGKTVQSFKDLGVTILHGDLNDHE 69
Query: 116 SIAKAVRYSNVVINLVG 132
S+ KA++ +VVI+ VG
Sbjct: 70 SLVKAIKQVDVVISTVG 86
>At2g44040.1 68415.m05475 dihydrodipicolinate reductase family
protein weak similarity to SP|Q52419 Dihydrodipicolinate
reductase (EC 1.3.1.26) (DHPR) {Pseudomonas syringae} ;
contains Pfam profiles PF01113: Dihydrodipicolinate
reductase N-terminus, PF05173: Dihydrodipicolinate
reductase C-terminus
Length = 347
Score = 32.3 bits (70), Expect = 0.58
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 53 NGIVATVFGCTGFVGRYVCNKLGKIGTQLI-LPYRGDFYDAQRLKVCG 99
NGI V GC+G +G+ V G ++ + + D QR++VCG
Sbjct: 71 NGISIMVNGCSGKMGKAVIKAADSAGVNIVPISFGSAGEDGQRVEVCG 118
>At1g75300.1 68414.m08747 isoflavone reductase, putative identical
to SP|P52577 Isoflavone reductase homolog P3 (EC
1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile
PF02716: Isoflavone reductase
Length = 322
Score = 32.3 bits (70), Expect = 0.58
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 59 VFGCTGFVGRYVCNKLGKIGTQLILPYR----GDFYDAQRLKVCGDLGQVLFTPYHLLDE 114
V G TG++G ++ K G R D ++ ++ DLG V L D
Sbjct: 10 VIGGTGYMGEFIVEGSAKAGNPTFALVREASLSDPVKSKTIQSFKDLG-VTILHGDLNDH 68
Query: 115 ESIAKAVRYSNVVINLVG 132
ES+ KA++ +VVI+ +G
Sbjct: 69 ESLVKAIKQVDVVISTIG 86
>At2g45310.1 68415.m05639 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 437
Score = 30.7 bits (66), Expect = 1.8
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 50 SSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLI-LPYRGDFYD 91
S+ NGI V G GFVG +V L + G +I L D+YD
Sbjct: 92 STNNGITVLVTGAAGFVGTHVSAALKRRGDGVIGLDNFNDYYD 134
>At5g01690.1 68418.m00086 cation/hydrogen exchanger, putative
(CHX27) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 732
Score = 30.3 bits (65), Expect = 2.4
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 127 VINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLSYLNAEEHPKPLVLKKPS 186
VIN+ ++ KN + +V ++ + + R+EG + + + + EE+ L+L+ S
Sbjct: 644 VINVFRKENSEKNIIFREVRIEEAVNLLDLLRKEGDDFDLMMVGIRHEEN--LLMLEGLS 701
Query: 187 AWKISKYLGE 196
W K LGE
Sbjct: 702 EWSDMKELGE 711
>At5g10730.1 68418.m01243 expressed protein
Length = 287
Score = 29.9 bits (64), Expect = 3.1
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 59 VFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIA 118
V G GFVG +VC + G + R Q +V + +LL + +
Sbjct: 61 VLGGNGFVGSHVCKEALDRGLSVSSLSRSGRSSLQE----SWASRVTWHQGNLLSSDLLK 116
Query: 119 KAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLS 169
A+ VI+ VG + + ++ Y + I R E+GV+RF+++S
Sbjct: 117 DALEGVTSVISCVG-GFGSNSYMYKINGTANINAI-RAASEKGVKRFVYIS 165
>At1g22980.1 68414.m02871 expressed protein
Length = 362
Score = 29.9 bits (64), Expect = 3.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 126 VVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGV 162
+VI ++ R E +N N V V+ + ++ ++C+ GV
Sbjct: 223 IVIRVITRMMEKENSNENSVFVESLEKLLKLCQRSGV 259
>At5g13490.1 68418.m01556 ADP, ATP carrier protein 2, mitochondrial
/ ADP/ATP translocase 2 / adenine nucleotide
translocator 2 (ANT2) identical to SWISS-PROT:P40941
ADP,ATP carrier protein 2, mitochondrial precursor
(Adenine nucleotide translocator 2) [Arabidopsis
thaliana]
Length = 385
Score = 29.5 bits (63), Expect = 4.1
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 19 GSMSVVYIKAANYSSDRKPNLAAYKRGTGGRSSFNGIV---ATVFGCTGFVGRYVCNKLG 75
G+ S++++ + +Y+ R N + + GG FNG+V G G Y +
Sbjct: 200 GASSLLFVYSLDYARTRLANDSKSAKKGGGERQFNGLVDVYKKTLKSDGIAGLYRGFNIS 259
Query: 76 KIGTQLILPYRG---DFYDAQR-LKVCGDLGQVLFTPYHL 111
G I+ YRG YD+ + + + GDL F + L
Sbjct: 260 CAG---IIVYRGLYFGLYDSVKPVLLTGDLQDSFFASFAL 296
>At3g59890.2 68416.m06683 dihydrodipicolinate reductase family
protein weak similarity to SP|Q52419 Dihydrodipicolinate
reductase (EC 1.3.1.26) (DHPR) {Pseudomonas syringae};
contains Pfam profiles PF01113: Dihydrodipicolinate
reductase N-terminus, PF05173: Dihydrodipicolinate
reductase C-terminus
Length = 343
Score = 29.5 bits (63), Expect = 4.1
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 53 NGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDA-QRLKVCG 99
NGI V GC+G +G+ V G ++ G +A Q ++VCG
Sbjct: 67 NGISIMVNGCSGKMGKAVIKAADSAGVNIVPTSFGSVEEAGQTVEVCG 114
>At3g59890.1 68416.m06684 dihydrodipicolinate reductase family
protein weak similarity to SP|Q52419 Dihydrodipicolinate
reductase (EC 1.3.1.26) (DHPR) {Pseudomonas syringae};
contains Pfam profiles PF01113: Dihydrodipicolinate
reductase N-terminus, PF05173: Dihydrodipicolinate
reductase C-terminus
Length = 349
Score = 29.5 bits (63), Expect = 4.1
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 53 NGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDA-QRLKVCG 99
NGI V GC+G +G+ V G ++ G +A Q ++VCG
Sbjct: 73 NGISIMVNGCSGKMGKAVIKAADSAGVNIVPTSFGSVEEAGQTVEVCG 120
>At3g23660.1 68416.m02975 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 765
Score = 29.5 bits (63), Expect = 4.1
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 199 VREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVA 256
VRE +P ++ D +GS+ RFL + +N +++N N ++T +F DV+
Sbjct: 699 VRERFPVPRLV-VCDQHGSQARFLLAKLNPSATYNN-----ANEMSTGSDVIFTDDVS 750
>At1g32220.1 68414.m03963 expressed protein
Length = 296
Score = 29.5 bits (63), Expect = 4.1
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 214 IYGSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAARDDD 267
IY S +RF+R L + S L P PV V D+A ++NA +DDD
Sbjct: 235 IYDSAERFIRPLRSLPASDLILAP-----------PVNVDDLALAVINAVKDDD 277
>At3g03980.1 68416.m00419 short-chain dehydrogenase/reductase
(SDR) family protein similar to short-chain type
dehydrogenase/reductase SP:Q08632 [Picea abies]
Length = 270
Score = 29.1 bits (62), Expect = 5.4
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 54 GIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRL 95
G VA V G + +GR + L ++G ++++ Y DA+R+
Sbjct: 16 GRVAIVTGSSRGIGRAIAIHLAELGARIVINYTSKAADAERV 57
>At2g34070.1 68415.m04171 expressed protein
Length = 385
Score = 28.7 bits (61), Expect = 7.2
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 17 LNGS-MSVVYIKAANYSSDRKPNLAAYKRGTGGRSSFNGIVATVFGCTGFVGRYV 70
L+G+ ++ Y+K + S K LAA GG+ G T GC F GR+V
Sbjct: 20 LSGADQALAYVKKPHVSQRNKTALAAVAGRGGGKEMLKGRKQT-SGCNLFQGRWV 73
>At1g30000.1 68414.m03669 glycoside hydrolase family 47 protein
similar to GI:5579331 from [Homo sapiens]; contains Pfam
profile PF01532: Glycosyl hydrolase family 47
Length = 624
Score = 28.7 bits (61), Expect = 7.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 297 DEKWGGYIRYDMKYDPILPL 316
D W GY +Y M YD ++P+
Sbjct: 137 DHAWSGYRKYAMGYDELMPI 156
>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
PBK1 protein (GI:3668141) [Homo sapiens]; weak
similarity to 60S ribosomal protein L10a.
(Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
Length = 372
Score = 28.3 bits (60), Expect = 9.5
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 186 SAWKISKYLGECAVREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKN--GL 243
SA K++K E E TAT+ D+ S +++RSL K+ S S +PLY+ L
Sbjct: 187 SAIKVAKLSMESDDIVENVTATLNGVVDVLPSRWKYIRSLHLKL-SESLSLPLYQTVPYL 245
Query: 244 ATVKQPVFVSDVAQGIVNAARDDD 267
P+ V +V G A D D
Sbjct: 246 QLKIDPLGVEEVKNGEGLAKSDVD 269
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.138 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,934,548
Number of Sequences: 28952
Number of extensions: 443589
Number of successful extensions: 1041
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1031
Number of HSP's gapped (non-prelim): 23
length of query: 399
length of database: 12,070,560
effective HSP length: 83
effective length of query: 316
effective length of database: 9,667,544
effective search space: 3054943904
effective search space used: 3054943904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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