GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000896-TA|BGIBMGA000896-PA|IPR002524|Cation efflux
protein, IPR013032|EGF-like region, IPR003571|Snake toxin
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    77   4e-15

>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 148 GSLFVIAAGLTEEWEHEASR-IADPALSACAAIVLVVFNYPFMRSAGLVLLQTVPEGLGA 206
           G++ VI+A L  ++   + R + DP +S     +++    P  +SA L+LLQ  P+ +  
Sbjct: 243 GNIGVISAALFIKYTDYSWRFLFDPCISILLTFIILFSAIPLCKSAALILLQVAPQSIKL 302

Query: 207 CDLRTAALRVPGVFAIHELHVWQLHRDKVVATAHVIYGTHED----YLKNSALVCDVFKR 262
            D+      + GV ++HELH+WQL   K++AT HV     +D    Y K +  + +V + 
Sbjct: 303 DDVSNLINHLDGVESVHELHIWQLSDVKLIATVHVCVTLPDDKGESYTKLTTDIRNVLQS 362

Query: 263 HGIGLVTLQPEF 274
            GI  VT+QPEF
Sbjct: 363 FGIYDVTIQPEF 374



 Score = 36.7 bits (81), Expect = 0.004
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 8/109 (7%)

Query: 37  NSPTLLVDTCHSLCRLVGLITTLISFKYERADEGTGREGRLRNTFGWARIEVVGRLSVHV 96
           +S  L+ D+ H L  +V L+  L +    R    T  E +   T+GW R E++G LS  V
Sbjct: 32  DSLALIADSFHMLNDIVSLLVALWA---TRLAHSTSHEPKY--TYGWQRAEILGALSNGV 86

Query: 97  LFASFALALVVNALQLGVHSSHGPPPRYPRVIVGSAVIGLLFNAINYML 145
              +  + + + A++  +     P    P ++     +GLL N +   L
Sbjct: 87  FLIALCMFIFMEAIERFIEP---PSVSNPTLMFFVGSLGLLSNFVGIFL 132


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.139    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,351,247
Number of Sequences: 5004
Number of extensions: 50611
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 2
length of query: 322
length of database: 2,362,478
effective HSP length: 73
effective length of query: 249
effective length of database: 1,997,186
effective search space: 497299314
effective search space used: 497299314
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)