Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000896-TA|BGIBMGA000896-PA|IPR002524|Cation efflux
protein, IPR013032|EGF-like region, IPR003571|Snake toxin
(322 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0707 - 20212190-20214592 62 8e-10
05_01_0214 - 1615519-1616775 46 4e-05
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 31 0.94
10_01_0230 - 2433082-2434674 30 2.9
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 29 5.0
11_08_0008 + 27591454-27592154,27595078-27595253,27595774-275959... 28 8.8
07_03_0834 - 21848064-21849752,21851121-21851850,21852617-21852705 28 8.8
01_06_1842 - 40278875-40280131 28 8.8
>08_02_0707 - 20212190-20214592
Length = 800
Score = 61.7 bits (143), Expect = 8e-10
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 168 IADPALSACAAIVLVVFNYPFMRSAGLVLLQTVPEGLGACDLRTA---ALRVPGVFAIHE 224
IADP S +I++V P +R++ +LLQ VP L D++ A +++ GV +H
Sbjct: 689 IADPICSVFISIMIVSSVLPLLRNSAEILLQRVPRSLEK-DIKEALDDVMKIKGVIGVHN 747
Query: 225 LHVWQLHRDKVVATAHVIYGTHEDYLKNSALVCDVFKRHGIGLVTLQPE 273
HVW L +V T H+ T D D+F GI +T+Q E
Sbjct: 748 FHVWNLTNTDIVGTFHLHITTEADKSSIREKASDIFHEAGIQDLTIQIE 796
>05_01_0214 - 1615519-1616775
Length = 418
Score = 46.0 bits (104), Expect = 4e-05
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 161 WEHEASRIADPALSACAAIVLVVFNYPFMRSAGLVLLQTVPEGLGACDLRTAALRVPGVF 220
W +I D + +++++ +R+ VL+++ P + A L + GV
Sbjct: 303 WYKPEWKIIDLICTLIFSVIVLFTTIKMLRNILEVLMESTPREIDATSLENGLRDMDGVV 362
Query: 221 AIHELHVWQLHRDKVVATAHVIYGTHEDYLKNSALVCDVFK-RHGIGLVTLQPE 273
A+HELH+W + KV+ HV D + V K + I VT+Q E
Sbjct: 363 AVHELHIWAITVGKVLLACHVTITQDADADQMLDKVIGYIKSEYNISHVTIQIE 416
>11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 31.5 bits (68), Expect = 0.94
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 151 FVIAAGLTEEWEHEASRIADPALSACAAIVLVVFNYPF--MRSAGLVLLQTVPEGLGACD 208
F++ L + ++HEA A ++SAC A+V V+ + P M + LQ++ L +
Sbjct: 1815 FLVTLALGDIFQHEALARASDSVSACRALVSVLEDQPTDDMTMVAICALQSLV--LHSRT 1872
Query: 209 LRTAALRVPGVFAIHEL 225
R A G+ + EL
Sbjct: 1873 NRRAVAEAGGILVVQEL 1889
>10_01_0230 - 2433082-2434674
Length = 530
Score = 29.9 bits (64), Expect = 2.9
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 55 LITTLISFKYERADEGTGREGRLRNTFGWARIEVVGRLSVHVLFASFALALVVNALQLGV 114
L TTL+ F + TG E R R G A + V+G L L+A+ + ++ A++ +
Sbjct: 14 LSTTLLVFLFHGGSSATGGEKRRRLPPGPATVPVLGNL----LWATNSGMDIMRAVR-RL 68
Query: 115 HSSHGP 120
H+ HGP
Sbjct: 69 HARHGP 74
>11_08_0007 +
27551173-27551828,27552071-27552282,27553371-27553550,
27555154-27556187
Length = 693
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 304 ECTGPRCCEPPNIPPIIRI 322
+CTG CC+ P+IPP + I
Sbjct: 170 DCTGLGCCQVPSIPPNLDI 188
>11_08_0008 +
27591454-27592154,27595078-27595253,27595774-27595968,
27598124-27599184
Length = 710
Score = 28.3 bits (60), Expect = 8.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 305 CTGPRCCEPPNIPPIIRI 322
CTG CC+ P+IPP + +
Sbjct: 187 CTGLGCCQVPSIPPNLSV 204
>07_03_0834 - 21848064-21849752,21851121-21851850,21852617-21852705
Length = 835
Score = 28.3 bits (60), Expect = 8.8
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 82 GWARIEVVGRLSVH--VLFASFALALVVNALQLGVHSSHGPPPRYPRVIVGSAVIGLLFN 139
G AR VH L A + + VN +G + + V A GL+FN
Sbjct: 699 GGARERFAELYDVHWSPLLAPTVVVMAVNVTAIGAAAGKAVVGGWTPAQVAGASAGLVFN 758
Query: 140 AINYMLLAGSLFVIAAGLTEEWEHEASRIADPALSACAAI 179
+L L+ A G+ W + ++ACAA+
Sbjct: 759 VWVLVL----LYPFALGIMGRWSKRPCALFALLVAACAAV 794
>01_06_1842 - 40278875-40280131
Length = 418
Score = 28.3 bits (60), Expect = 8.8
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 164 EASRIADP---ALSACAAIVLVVFNYPFMRSAGLVLLQTVPEGLGACDLRTAALRVPGVF 220
E S A P A +ACAA P A +L + VP G G RT AL V G+
Sbjct: 254 ETSAAAPPPSIATAACAAAAAAA-TAPAPAPATSMLRRLVP-GHG----RTGALTVTGIR 307
Query: 221 AIHELHVWQLHRDKV 235
VWQL R+K+
Sbjct: 308 LGRASPVWQLRRNKL 322
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.325 0.139 0.441
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,450,889
Number of Sequences: 37544
Number of extensions: 371374
Number of successful extensions: 1013
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1006
Number of HSP's gapped (non-prelim): 8
length of query: 322
length of database: 14,793,348
effective HSP length: 82
effective length of query: 240
effective length of database: 11,714,740
effective search space: 2811537600
effective search space used: 2811537600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)
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