GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000896-TA|BGIBMGA000896-PA|IPR002524|Cation efflux
protein, IPR013032|EGF-like region, IPR003571|Snake toxin
         (322 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   2.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   8.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   8.2  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 72  GREGRLRNTFGWARIEVVGRLSVHVLFASFALALVVNALQLGVHSSHGPPPRYPRVIVGS 131
           G+E +  NTF    + +VG L + ++F S A  ++V    + +++  G   R   + + S
Sbjct: 11  GKEDQPENTFSLLSVLLVGFLFLILIFLSVAGNILV---CVAIYTDRG-LRRIGNLFLAS 66

Query: 132 AVIGLLFNAINYMLLAG 148
             I  LF     M  AG
Sbjct: 67  LAIADLFVGCLVMTFAG 83


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 272 PEFMLTSSRGTEEEKK 287
           P   LTS RG E+E K
Sbjct: 314 PNLRLTSERGYEQESK 329


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 272 PEFMLTSSRGTEEEKK 287
           P   LTS RG E+E K
Sbjct: 404 PNLRLTSERGYEQESK 419


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 85  RIEVVGRLSVHVLFASFALA 104
           RI+V+ R+   ++FA F LA
Sbjct: 414 RIDVISRIFFPIVFAFFNLA 433


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 85  RIEVVGRLSVHVLFASFALA 104
           RI+V+ R+   ++FA F LA
Sbjct: 414 RIDVISRIFFPIVFAFFNLA 433


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.139    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,736
Number of Sequences: 429
Number of extensions: 3316
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 322
length of database: 140,377
effective HSP length: 58
effective length of query: 264
effective length of database: 115,495
effective search space: 30490680
effective search space used: 30490680
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)